LOC110488901 (LOC106604584)


Basic Information

Item Value
gene id LOC110488901
gene name LOC106604584
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15557717 ~ 15562695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561352.2
AGGTCAACTGTAGGTGGCCGCACCTAGGAGGAGGAGTCACGTCATTGAGGTGGTTCCCTAACAACATCTCTAAGATATTTTAGTAATCTAATGCGACATTCTGGGTGTAATATTCAGGCTACAAGATacaatgagtctctctgggggaagagaggaggaggagggggcgacGGACTTTAagatgagtctctctggggaacgTGACACTGACAGTGTGGACCATGGTGGAGAGTGCTGTTCGAAATCCGATCTTAAGAAATATGCCTCtgatctcacactggacccaaacacagcatTCAGAGAGCTTACTCTGTCTGAGCAGAACAGGAAGGTGACAAAGGTGAGAGACGAGCAGCCGTATGctgatcacccagagagatttgacTTCTGCAGACAGGTGCTttgtagagagggtctgactgggcgctgttactgggaggtagagtggagtgggGAAGGGGCTGATATAGCagtgacatataaaggaatcAACAGGATAGGTGATGGTAATGACTGTGATCTTGGATTCAATATCAAGTCCTGGAGTGTGCACTGCTCTGATGATGGTTACAATGCCTGGCACAATGACGAGAGTATTGCCAtacctgtcccctcctcctcccactcaaacagagtaggagtgtatctggactggcccgctggcactctgtccttctacagcgTCTCCTCTGATGCACTGATCCGCGTGCACACATTCCACTCCACATTCACTGAGCCTCTCTACCCAGGATTTGGGATTTGGGCGACTGGCTCCTCAGTGACCCTGTGTCAGGTAGAATAGCCTCCTGTTTCCTGGAGGAACATCAGGGAAGTCACACTCCAGTTCAAACACCTGTAAGCATGACAGAACACACACTTTCA
>XM_021561353.2
GTATCCAAAGGTCAACTGTAGGTGGCCGCACCTAGGAGGAGGAGTCACGTCATTGAGGTGGTTCCCTAACAACATCTCTAAGATATTTTAGTAATCTAATGCGACATTCTGGGTGTAATATTCAGGCTACAAGATacaatgagtctctctgggggaagagaggaggaggagggggcgacGGACTTTAagatgagtctctctggggaacgTGACACTGACAGTGTGGACCATGGTGGAGAGTGCTGTTCGAAATCCGATCTTAAGAAATATGCCTCtgatctcacactggacccaaacacagcatTCAGAGAGCTTACTCTGTCTGAGCAGAACAGGAAGGTGACAAAGagtaggagtgtatctggactggcccgctggcactctgtccttctacagcgTCTCCTCTGATGCACTGATCCGCGTGCACACATTCCACTCCACATTCACTGAGCCTCTCTACCCAGGATTTGGGATTTGGGCGACTGGCTCCTCAGTGACCCTGTGTCAGGTAGAATAGCCTCCTGTTTCCTGGAGGAACATCAGGGAAGTCACACTCCAGTTCAAACACCTGTAAGCATGACAGAACACACACTTTCA
>TU1392375
GTCATTGAGGTGGTTCCCTAACAACATCTCTAAGATATTTTAGTAATCTAATGCGACATTCTGGGTGTAATATTCAGGCTACAAGATacaatgagtctctctgggggaagagaggaggaggagggggcgacGGACTTTAagatgagtctctctggggaacgTGACACTGACAGTGTGGACCATGGTGGAGAGTGCTGTTCGAAATCCGATCTTAAGAAATATGCCTCtgatctcacactggacccaaacacagcatTCAGAGAGCTTACTCTGTCTGAGCAGAACAGGAAGGTGACAAAGagtaggagtgtatctggactggcccgctggcactctgtccttctacagcgTCTCCTCTGATGCACTGATCCGCGTGCACACATTCCACTCCACATTCACTGAGCCTCTCTACCCAGGATTTGGGATTTGGGCGACTGGCTCCTCAGTGACCCTGTGTCAGGTAGAATAGCCTCCTGTTTCCTGGAGGAACATCAGGGAAGTCACACTCCAGTTCAAACACCTGTAAGCATGACAGAACACACACTTTCAGAAAAAAAGGGTATGGTTAGGGTACGATATTGTTCCCTGTGGTACAAATATCAACATACACCATTATGTACTTATGTACACATAGTAATCTAGTACAATGGTACATTTTTGTACCAAATATTTTGAATATAAAAGTACAATCATTGGAGGTGTAGCTTATTGGGGGAGTGGCTTTCaattagttatttttggccacccttGAGTGGAAGTGTTGTACCAGTGGTCCATGGTTATGTTAATTTGAGTTTGAGCATATCTGCTGGATATCTTTTCAAGACGTATATACATATGTAAGAGCATGTGACAATAAAGAGCTGTAAATAATATTATAGCGACATTAACCCAACATTGAGCCACCTTGTCAAGAGGTATGGACCTCTTGGCATGATGGTGTGGTGCTGGCTTAACAGTCACTGgacccaggttcaaatcctggtCGGGTCTACCCCCTGAATTTATTACCTTTGTGTCAAAAGGGGGATGGTGGGAAGTGTACATGTGAGAGACCTGGTATAGAAAATAGGTATATTAATTATAAatcatttggtgggtgcttatgcCGTGTTTGTCTTATACACATGTGGGAATTAGAAATGAGATGTTCTGCATATCACAATTCCCCCATCATCAAcagcgaccctggagcaattagggttaagtgctttgctcaagggcctTGTTGGCATGGGGATTCGAACTAGCAActtttctgttactggcccaacactctaacctctaggctacagTACCTGACACCACCATTATTTTCTGACATCCCAGGTTTTGGCACTTAAAATGAACAAAAAGCTTTGTCACTGAGGTTGTACCTTAAAAAGGAACATTTGTACCTTTTTGGCTCTTTTAATGTGCGGACTGCAAGGGTACTGTTATGTGCCTATAACATAACTAATGAGTAATAAGAGGATACCACTAGAGTGACAAGCGTTTCTACCCCTTTAAGTACAATACGGTACCTTTTTTTTCTGAGAGTACAgagaaatgtttttaaatgaaCAATCTTTTTGATATTGTTTTAATTCCTTGGTGTTTGTAAATATTGCCATCGGTAGAACACATATTTGTCAAAATGTCCACACAACAATCCTTTATGCAATTTAAACAGATGAAAGAAGATGTTTTCATTTGCATTTACAAGAATATGGCTTTTCAATAAATGAAGTCCTTcatacctacagt

Function

NR:

description
uncharacterized protein LOC110488901 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561352.2 False 882 mRNA 0.50 4 15558914 15562687
XM_021561353.2 False 597 mRNA 0.50 5 15558914 15562695
TU1392375 True 1746 lncRNA 0.42 5 15557717 15562647

Neighbor

gene id symbol gene type direction distance location
nanos1 nano1 coding downstream 54109 15502250 ~ 15504805 (-)
lbx2 LOC106604581 coding downstream 186108 15370261 ~ 15372806 (-)
adad1 adad1 coding downstream 395079 15146305 ~ 15163835 (-)
bbs12 LOC106604585 coding downstream 492941 15063216 ~ 15065973 (-)
LOC100136280 LOC106604591 coding downstream 497715 15056048 ~ 15061199 (-)
LOC110488902 LOC106604579 coding upstream 55208 15617903 ~ 15628633 (-)
LOC110488905 LOC106604573 coding upstream 220392 15783087 ~ 15804150 (-)
LOC110488908 LOC106604571 coding upstream 275910 15838605 ~ 15860342 (-)
LOC110488909 LOC106604570 coding upstream 302192 15864887 ~ 15888346 (-)
LOC110488910 LOC106604568 coding upstream 326713 15889408 ~ 16064840 (-)
G1219560 NA non-coding downstream 5184 15553488 ~ 15553730 (-)
G1219559 NA non-coding downstream 5680 15553028 ~ 15553234 (-)
G1219506 NA non-coding downstream 37485 15521212 ~ 15521429 (-)
G1219499 NA non-coding downstream 43104 15515511 ~ 15515810 (-)
G1219494 NA non-coding downstream 48015 15510633 ~ 15510899 (-)
G1219650 NA non-coding upstream 21187 15583882 ~ 15584118 (-)
G1219653 NA non-coding upstream 23726 15586421 ~ 15586621 (-)
G1219664 NA non-coding upstream 34139 15596834 ~ 15597034 (-)
G1219669 NA non-coding upstream 45692 15608387 ~ 15608623 (-)
G1219641 NA non-coding upstream 53218 15615913 ~ 15616408 (-)
G1219208 NA other downstream 240754 15317793 ~ 15318160 (-)
G1218808 NA other downstream 564535 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 1001533 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 1844037 13683784 ~ 13715500 (-)
G1216443 NA other downstream 2716161 12841496 ~ 12842753 (-)
asb5a LOC101464329 other upstream 1835646 17395671 ~ 17399280 (-)
G1225043 LOC108238713 other upstream 4273183 19835878 ~ 19836319 (-)
G1225499 NA other upstream 4571016 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 4759083 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 4903035 20465730 ~ 20470523 (-)

Expression


Co-expression Network