LOC110489473 (LOC107705928)


Basic Information

Item Value
gene id LOC110489473
gene name LOC107705928
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 17022759 ~ 17027113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035944.1
ATATGAGGAGGTCATGCAGTACACATTGGACTGACTGTCTTGAGGTTTGGACCACTGGCTGACCCCCTTCTACATGGCTTGGCTTTCCTGTTGATTTATTTATCAGAGAATAGGTGTGAGAAACAAATGAGCCTGTTTCCTGACTGTTTCAGTAGAAACGGTTCTGAAATGAGCCACTTGTTAAAATAAAATGGGGTTGGGTTAAGGCTAAGGGAGAGTTCTGAATATTTTTGACAATTATTTGTCTAAGATGTGCAACCATAGCAACATGTCTTGATTAGAAAAAGTTGATTGTTTATTCTATGAATCATCTTTTTCATTTGAACAAGGATATCATGTTTGTTCATGAAGGTACTTTGGAAAAAAAGCAACAACTTTTGCAGTGTGAATTGAGTATGAATTCAGTTCCATTCAAAAGGGCCAAGAGTGAACTGAACATGGACCCGTTCGTTTCACATCCCAATTCCCTCGGCATCAAATAAAGGGTGGGGTGGACAGTTGTCTCATTGGCCCTCAGTACATGGAGAAGAATGCGGTGACGACTACCAGCCCAGAGTCATTCACGAAGGGCCGGCCCTTCTAGGAGACAAAGCAATATCCCAGCAGAGTATGAAGTCATCACCACCGTTTGTATGCAACATTACAAAAGGTTCAGTAAGGTTCACCTACGTCTCGACACGAGACAGGGACCAGTCTGGTCAGACCCTGACCCAAGAGTGCCTGGTTCATCAGTCAGTCTTAATGGGTGGGTGGGGTTTCTATGGGTACAGGTGGGGCTACAGTAAATATTCATAACGTATGATAACTATGAAGCAATTAAGAGGTAAttgttttacagttttttttacgATTGCTTACACACTAAAATGTAACTTTTCCCACAATTAGCAAAACCTTACACTCAAGGAGCAAAACACAAGGCTAGATTTGCACAACTGTAAGCGCATTGTCAGCTTCACACTATTTGCAAAACATTACACACAGtgatttgcaaaacactaaacacacttgTATACATCAGACACAGAAGTATATCATGATGTCACTTCCTTGCAATTCCAAAGCACTGACTGTCAAATTACCACACCTATGAGCCAATCTGTTAAACACAGCCATCAGGTGCACAAACACATGATTGCTAAATTGTAGACGCACCAATCAGGTTTAAGCACTATAAAAATGCAGCTGGTAGGTTCACCTGCCTTCAACCAAAATGGAAGAAGTCAGAagaagagtgagggtgagaggaggagtacacagagaaggaggtagaggaagaggccGAGCCAGAGGTCGAGGAAGACCTGAAGCAGGAGGAGAATGTGCACAAAGAAGAGGACCAAACTTATCAAATGACATTCGTGCAACACTAGTGGACCATGTTGTGAACCACGGATTGAcgctgagggaggctggactgagagttcAGCCAAATCTTAGCAGATATACAGTGGCATCTGTCATAAGGACTTTTCGACAGGAAAACGGGCTTGAGGGTCGGGAACGACAAGGAGGAAGGGGGCCCATATTCACACAAGAACAAGAGAGATAGTAAACATGGTTTTGGCCAATAATGCTATCAGGCTCAGAGAACTACAAGCCAACATTATCGGTGACCATGCCATTTTCAATAATGTCCACCAGGTCTCTCAGTCAACACTGGCACGCATTCTGAAAAGACATCAGGTTCAAATGAAACAACTTTATCGAGTGCCTTTTGAGCGGAATTCAGAGAGGGTCAAACGGCTGCGGCATGAGTATGTGGAGGGAGTTTTGCAGATGGATGCTGAGGAAATCCTGCAGGAATTCATATATATTGATGAGGCAGGGTTCAACCTCACAAAAgcaagaaggagaggaagaaatatcattggccacagggctataatcaatgtcccagggcaacgtGGGGGTAACATCACCCTTTGCGCTGACATTTCAGAGCATGGGGTTGTCCTCCGTCATGCCAAAATGGGCCCATACAACACCTCACATTCTCACACTTTTGGACCGATTGCACCACATCGTCACAGCAGGTAATGAAATGCACCAGATGCAATACACGGTCATCTGGGACAATGTGTTATTCCACCGCTCTGCTTTGGTCCAGAACTGGTTTCAACAGCATCCACAGTTGTCAGTACTATACCTTCCACCATACTCTCCGTTTCTAAACCCTATCGAAGAGTTGTTCTctgcatggcggtggaaggtttacgatctccagccccaggctcaggtacccctcattcaggccatggAGGACGCCTGTGACCAAGTCCACGCCGCAGCTGACTTTCAAGACGGTTCTTCCCGCGTTGTCTTGCTAATGACGATATTGCTTGTGATGTTGATGAAATTCTCTGGCCAGATCCAGCTAGGCGAAGAGATAATGTATAGtatgtttactgtagtattttctgTACAATATTGTCCGTTTTTTTCAGattattttttatgtttgttgttgttgttatttactgtaaTTGTAACCTGTACTGGATACAGTATTTTACGTTTGTCTGTTTGCTGAGCTAACAGTGTTATGCACACTACTGTAGTAGCATGAAAACTGAGACATGTTAtgttgtgattctccatgttgaCATGTTGACTGATTTGGGTATATGGAGAGAAATAAATGATATTTTCCTCAGTCTGCAGCATTGGTCTTGTGTCGT
>XR_002468578.2
TATATGAGGAGGTCATGCAGTACACATTGGACTGACTGTCTTGAGGTTTGGACCACTGGCTGACCCCCTTCTACATGGCTTGGCTTTCCTGTTGATTTATTTATCAGAGAATAGGTGTGAGAAACAAATGAGCCTGTTTCCTGACTGTTTCAGTAGAAACGGTTCTGAAATGAGCCACTTGTTAAAATAAAATGGGGTTGGGTTAAGGCTAAGGGAGAGTTCTGAATATTTTTGACAATTATTTGTCTAAGATGTGCAACCATAGCAACATGTCTTGATTAGAAAAAGTTGATTGTTTATTCTATGAATCATCTTTTTCATTTGAACAAGGATATCATGTTTGTTCATGAAGGTACTTTGGAAAAAAAGCAACAACTTTTGCAGTGTGAATTGAGTATGAATTCAGTTCCATTCAAAAGGGCCAAGAGTGAACTGAACATGGACCCGTTCGTTTCACATCCCAATTCCCTCGGCATCAAATAAAGGGTGGGGTGGACAGTTGTCTCATTGGCCCTCAGTACATGGAGAAGAATGCGGTGACGACTACCAGCCCAGAGTCATTCACGAAGGGCCGGCCCTTCTAGGAGACAAAGCAATATCCCAGCAGAGTATGAAGTCATCACCACCGTTTGTATGCAACATTACAAAAGGTTCAGTAAGGTTCACCTACGTCTCGACACGAGACAGGGACCAGTCTGGTCAGACCCTGACCCAAGAGTGCCTGGTTCATCAGTCAGTCTTAATGGGTGGGTGGGGTTTCTATGGGTACAGGTGGGGCTACAGTAAATATTCATAACGTATGATAACTATGAAGCAATTAAGAGGTAAttgttttacagttttttttacgATTGCTTACACACTAAAATGTAACTTTTCCCACAATTAGCAAAACCTTACACTCAAGGAGCAAAACACAAGGCTAGATTTGCACAACTGTAAGCGCATTGTCAGCTTCACACTATTTGCAAAACATTACACACAGtgatttgcaaaacactaaacacacttgTATACATCAGACACAGAAGTATATCATGATGTCACTTCCTTGCAATTCCAAAGCACTGACTGTCAAATTACCACACCTATGAGCCAATCTGTTAAACACAGCCATCAGGTGCACAAACACATGATTGCTAAATTGTAGACGCACCAATCAGGTTTAAGCACTATAAAAATGCAGCTGGTAGGTTCACCTGCCTTCAACCAAAATGGAAGAAGTCAGAagaagagtgagggtgagaggaggagtacacagagaaggaggtagaggaagaggccGAGCCAGAGGTCGAGGAAGACCTGAAGCAGGAGGAGAATGTGCACAAAGAAGAGGACCAAACTTATCAAATGACATTCGTGCAACACTAGTGGACCATGTTGTGAACCACGGATTGAcgctgagggaggctggactgagagttcAGCCAAATCTTAGCAGATATACAGTGGCATCTGTCATAAGGACTTTTCGACAGGAAAACGGGTAAAAGATCTGTCTACAGTTACAGTAATCAGCTACTTATTGTATGCACCATATCAGCACTTGTGATaccccttcctgtgacattgtacAGTAAGTTACATGTATTATTCTCTACATAGGCTTGAGGGTCGGGAACGACAAGGAGGAAGGGGGCCCATATTCACACAAGAACAAGAGAGATAGTAAACATGGTTTTGGCCAATAATGCTATCAGGCTCAGAGAACTACAAGCCAACATTATCGGTGACCATGCCATTTTCAATAATGTCCACCAGGTCTCTCAGTCAACACTGGCACGCATTCTGAAAAGACATCAGGTTCAAATGAAACAACTTTATCGAGTGCCTTTTGAGCGGAATTCAGAGAGGGTCAAACGGCTGCGGCATGAGTATGTGGAGGGAGTTTTGCAGATGGATGCTGAGGAAATCCTGCAGGAATTCATATATATTGATGAGGCAGGGTTCAACCTCACAAAAgcaagaaggagaggaagaaatatcattggccacagggctataatcaatgtcccagggcaacgtGGGGGTAACATCACCCTTTGCGCTGACATTTCAGAGCATGGGGTTGTCCTCCGTCATGCCAAAATGGGCCCATACAACACCTCACATTCTCACACTTTTGGACCGATTGCACCACATCGTCACAGCAGGTAATGAAATGCACCAGATGCAATACACGGTCATCTGGGACAATGTGTTATTCCACCGCTCTGCTTTGGTCCAGAACTGGTTTCAACAGCATCCACAGTTGTCAGTACTATACCTTCCACCATACTCTCCGTTTCTAAACCCTATCGAAGAGTTGTTCTctgcatggcggtggaaggtttacgatctccagccccaggctcaggtacccctcattcaggccatggAGGACGCCTGTGACCAAGTCCACGCCGCAGCTGACTTTCAAGACGGTTCTTCCCGCGTTGTCTTGCTAATGACGATATTGCTTGTGATGTTGATGAAATTCTCTGGCCAGATCCAGCTAGGCGAAGAGATAATGTATAGtatgtttactgtagtattttctgTACAATATTGTCCGTTTTTTTCAGattattttttatgtttgttgttgttgttatttactgtaaTTGTAACCTGTACTGGATACAGTATTTTACGTTTGTCTGTTTGCTGAGCTAACAGTGTTATGCACACTACTGTAGTAGCATGAAAACTGAGACATGTTAtgttgtgattctccatgttgaCATGTTGACTGATTTGGGTATATGGAGAGAAATAAATGATATTTTCCTCAGTCTGCAGCATTGGTCTTGTGTCGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107746645

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035944.1 False 2681 mRNA 0.44 4 17022759 17027112
XR_002468578.2 True 2801 mRNA 0.43 3 17022759 17027113

Neighbor

gene id symbol gene type direction distance location
LOC110488920 gar1 coding downstream 46063 16971499 ~ 16976696 (-)
LOC110488919 adhx coding downstream 51876 16963108 ~ 16970883 (-)
eif4ea LOC106604514 coding downstream 60204 16958673 ~ 16962555 (-)
LOC118938700 NA coding downstream 76996 16944260 ~ 16945763 (-)
LOC110488917 LOC106604562 coding downstream 352786 16351751 ~ 16669973 (-)
lrit3a LOC106604555 coding upstream 297829 17324942 ~ 17334173 (-)
gpm6aa gpm6a coding upstream 310282 17337395 ~ 17354719 (-)
spata4 spata4 coding upstream 363296 17390409 ~ 17395524 (-)
asb5a LOC101464329 coding upstream 368558 17395671 ~ 17399280 (-)
aga aga coding upstream 386034 17413147 ~ 17418649 (-)
G1221449 NA non-coding downstream 89015 16933502 ~ 16933744 (-)
G1221440 NA non-coding downstream 107920 16914206 ~ 16914839 (-)
G1221126 NA non-coding downstream 202155 16820166 ~ 16820604 (-)
G1221118 NA non-coding downstream 211373 16811151 ~ 16811386 (-)
G1221115 NA non-coding downstream 212628 16809891 ~ 16810131 (-)
G1221639 NA non-coding upstream 185403 17212516 ~ 17212971 (-)
G1221673 NA non-coding upstream 218774 17245887 ~ 17246107 (-)
G1221901 NA non-coding upstream 265010 17292123 ~ 17292355 (-)
G1221902 NA non-coding upstream 266637 17293750 ~ 17294055 (-)
G1221909 NA non-coding upstream 278414 17305527 ~ 17305838 (-)
G1219208 NA other downstream 1704599 15317793 ~ 15318160 (-)
G1218808 NA other downstream 2028380 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 2465378 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 3307882 13683784 ~ 13715500 (-)
G1216443 NA other downstream 4180006 12841496 ~ 12842753 (-)
G1225043 LOC108238713 other upstream 2808765 19835878 ~ 19836319 (-)
G1225499 NA other upstream 3106598 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 3294665 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 3438617 20465730 ~ 20470523 (-)

Expression


Co-expression Network