aga (aga)


Basic Information

Item Value
gene id aga
gene name aga
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 17413147 ~ 17418649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561398.2
CAAAACAAGGAAGTCGAAAAATGAACGTTCATTCTTAGTGAAATTCTTCATGAAAGCTAGGTTTATTTTTAACCAACTAATTTCAAAACGCCTCGTATATTTTCGAAATACTGTGGACCGTTAAAAAAATCACTTGCAATTAACATGTTCTGGAAAAAAATTGCAGTTGAAACTGAAAGCTAACGTTATTTATTTTGCAAAACTTTTGTCAAAATGCATCTGTGTTTTATATTGATGTTTTTGTTGCCATTTGGTCACGCAACATTGCCTCTTGTTATAAACACATGGCAATTCGAGCATGCTACAGCGGCAGCGTGGACTGCTCTGCAGGCTGGGGGCTCTGTGCTGGATGCCGTGGAGAAGGGCTGTGCCCGCTGCGAGGCTGACCAGTGTGATGGCAGTGTGGGGTTTGGAGGGAGcccagatgagagaggagagaccacccTGGATGCCATGATCATGAACGGTAATACAATGGAGGTGGGCGCTGTAGGAGACCTACGCAGAATCAAGAATGCAATTGGGGTGGCCAGAGCCGTGATGGAACGCACCGACCACACACTACTGGTGGGCGAGTCAGCATCAGTCTTTGCTGAGAACATGGGCTTCACTGCAGAAGACCTTACAACCAACAAATCTATCAGCATTTTCACACAGTGGTTGAAGGACAACTGCCAACCCAATTATCGCAAGAACGTTTCCCCAGATCCTTCACAATACTGTGGACCATACAAACCTGGAGCCACACTGAGGCAAAAGAGAAAACGACAGATTGATATACATGCACATGACACTATTGGGATGATTGTGATTGGTAAAGATGGCCAAGTTGCAGCAGGAACATCAACCAATGGAGCGAACCATAAGGTCCCGGGGCGTGTAGGGGACTCTCCCATCGCTGGAGCAGGGTCCTATGCCGACAGCACCGCAGGGGGTGCGGCAGCAACGGGAGATGGAGATGTCATGATGCGCTTCCTACCTAGTTACCTGGCTGTTGAGCTAATGAAGACAGGAACAGATCCATCCACTGCTTGTAAGACATCCATCTCCAGGATCAAGATACATTACCCAGGGTTCTTTGGGGCTGTCATCTGTGCCAACACAACAGGCCACTATGGTGCTGCATGCAACAAAGTTCCTGGCTTCTCTAAATTTCCTTTTGTGGTGTACAACTCAAATACCAAATCTCCACTTTTACAATCAGTTGACTGTTTTTAAAACTATTCAATGTTAATTTGAGGTAATGTGTACCCCTTGTGCCACTATCAATTATGACAATCAATACTTGTCTTATGAGCCATGGATTTTAATCTAAACTGTTTGAATGTTTTCATAAATACAGAAATAGTTCACATTTTATGAATAAACTCATAATACAAAAA

Function

symbol description
aga Predicted to enable N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity. Predicted to be involved in protein deglycosylation. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in aspartylglucosaminuria and lysosomal storage disease. Orthologous to human AGA (aspartylglucosaminidase).

NR:

description
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01444 AGA, aspG; N4-(beta-N-acetylglucosaminyl)-L-asparaginase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561398.2 True 1382 mRNA 0.44 9 17413147 17418649

Neighbor

gene id symbol gene type direction distance location
asb5a LOC101464329 coding downstream 13867 17395671 ~ 17399280 (-)
spata4 spata4 coding downstream 17623 17390409 ~ 17395524 (-)
gpm6aa gpm6a coding downstream 58428 17337395 ~ 17354719 (-)
lrit3a LOC106604555 coding downstream 78974 17324942 ~ 17334173 (-)
LOC110489473 LOC107705928 coding downstream 386034 17022759 ~ 17027113 (-)
ctso ctso coding upstream 207191 17625840 ~ 17634581 (-)
LOC110488931 pdgfc coding upstream 285423 17704072 ~ 17777597 (-)
LOC110489474 NA coding upstream 522278 17940927 ~ 17945892 (-)
gask1b fam198b coding upstream 585904 18004553 ~ 18013741 (-)
LOC110488938 LOC106604531 coding upstream 806619 18225268 ~ 18230133 (-)
G1221969 neil3 non-coding downstream 5179 17407074 ~ 17407968 (-)
G1221968 NA non-coding downstream 6253 17406546 ~ 17406894 (-)
G1221950 NA non-coding downstream 42272 17370566 ~ 17370875 (-)
G1221948 NA non-coding downstream 45437 17367443 ~ 17367710 (-)
G1221947 NA non-coding downstream 45718 17367180 ~ 17367429 (-)
G1222069 NA non-coding upstream 140004 17558653 ~ 17586749 (-)
G1222093 NA non-coding upstream 188546 17607195 ~ 17607559 (-)
G1222096 NA non-coding upstream 192853 17611502 ~ 17611709 (-)
G1222106 NA non-coding upstream 201417 17620066 ~ 17620402 (-)
G1222275 NA non-coding upstream 223377 17642026 ~ 17642244 (-)
G1219208 NA other downstream 2094987 15317793 ~ 15318160 (-)
G1218808 NA other downstream 2418768 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 2855766 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 3698270 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 2417229 19835878 ~ 19836319 (-)
G1225499 NA other upstream 2715062 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2903129 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 3047081 20465730 ~ 20470523 (-)
G1225875 NA other upstream 3304388 20723037 ~ 20723236 (-)

Expression


Co-expression Network