LOC110489474


Basic Information

Item Value
gene id LOC110489474
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 17940927 ~ 17945892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468579.2
TcatatttaatttaattgaggCACCTCCATCTTGTTACAGAACTCCAAGATTTCCTTTGGCTGAGAAGGTACTGAACATGCTCTCAAAAATGTTGGTGCCTGGAAAATACATGTTTCTGAGTCCAGTTGGGGGCAGTAAAGCAACACATCGGATGCCAACTGCCGAGAAACTCCAAAGATTTCCCCTGTTCACCCATGCCAGTGAGGCCTGATCGCTGAAGCAGACAAACTGAGACACTTGGAGGCTCAGCTAAACTCTTTAGCGCAACAGAGCTTTGGGGGCCAATTTCTTTGCCACAGAGAAAGGAATGTGCAAACTGAAAGACAATGAAGGTATCTTCACAGATCCAGTGAAGGGAGTCTACTACTTCACATTATGTACGTTTGTCTACAATGACTACAAGGGTGCTGATGGTGACAATGTGGCCATTTTGAATCTGAATAATGGGGACAGGGTCTGTGTGGAACTGTGGGAACAGTGCCAGGTGTAAGACAACAATGATGGGCACATTACCTTCAGTGTGTAAAATAGATGTTATAACCTGTCAATTAGTGATGGGaggtgaacaagtgcacactttgggaggaaTGAGCGCTAATTGGGACAGAgcctctgtctgtaatgaagcagGAATTCTCTTGACGGTGACTGAATTTCGTGAGAATTGTGTACCTATGCTGAATCCCAAACCAGCCCTGTTTTCTCATGGACTGCACTTGCAAGTTGTATTTTCTATTTTTAAAGTTTTCATATCCACAATATTTCTGGCCTTTTTGGTgattttgtttatggaaaagcCTGGATTATAATTTATGAACTTCTCATGCCTCCATGTTATTTTTCTAGGCTGTTAACTTAGTTTagtgtttttttaattttttaaatgacTATGATTAACTGTAGACATTGTTTTTGAACCGTTGAACTTCAGTATGCCAATGCAATTCATTAGACATTTTCAGACTGACTGTCATGTGGTCTTCAGTGTACTCTGTATAATAATATACTTTCCATCTCCTCTAAAATAAGGTGCATCTTTGCCTTGAGCCACCAGGTATATTTTTAGAGTGAATAGGATGACCTTCATTTACTCTTGGGTACTGTCCTAGAATCCAGAAAAGTAATTTAAAATATTACGTTTTGAGCCACAGATGCAGCCACTTCTTCCTGCAAAGGTTGTTCAGTGTTGTTTTTATCTAGACTTACTCAAAAACACTGACCGTTTGGATGGATTCATTCTTAATTAAATATGCAGTGAGTTCAGGACATCTTTTTGAACCTTATGCATTGGAAAAATGTCTgacaaaaatgtagaactagaCAAGATGATGGGCCAATTTTAACGTCCGCCACACTAAGCTGTCAGGGTGTATAGCAACATCCTATTGTACTGGGTCCAGTTTCCCAATTGCATCTTAAAGCTAAGTTCGCTAGAACCTTGGTAGGAGCCATGTTAACTCTAAGCTGTTTCCCAAACCACCGTTGCTAAAGTTGCTCTTGAAAATGGTCGTTATTTAACCATTGCCTCAAACCAGTCGTTAGATGCTTTTTTTTTTGCCCTTCCGCGTCACTGTATACACAATCAAGATGTTTCTGTATTTCTGTGACTGCAGATAACTTCAGAACGAATGTGACTACAAATTTGCAAATTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468579.2 True 1655 mRNA 0.40 3 17940927 17945892

Neighbor

gene id symbol gene type direction distance location
LOC110488931 pdgfc coding downstream 163330 17704072 ~ 17777597 (-)
ctso ctso coding downstream 306346 17625840 ~ 17634581 (-)
aga aga coding downstream 522278 17413147 ~ 17418649 (-)
asb5a LOC101464329 coding downstream 541647 17395671 ~ 17399280 (-)
spata4 spata4 coding downstream 545403 17390409 ~ 17395524 (-)
gask1b fam198b coding upstream 58661 18004553 ~ 18013741 (-)
LOC110488938 LOC106604531 coding upstream 279376 18225268 ~ 18230133 (-)
LOC110487745 NA coding upstream 294787 18240679 ~ 18242800 (-)
LOC110488940 LOC106604535 coding upstream 638488 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 1198238 19144130 ~ 19164344 (-)
G1222498 NA non-coding downstream 4173 17936545 ~ 17936754 (-)
G1222489 NA non-coding downstream 10325 17930090 ~ 17930602 (-)
G1222482 NA non-coding downstream 18208 17922399 ~ 17922719 (-)
G1222473 NA non-coding downstream 23916 17916777 ~ 17917011 (-)
G1222462 NA non-coding downstream 29066 17911465 ~ 17911861 (-)
G1222513 NA non-coding upstream 1787 17947679 ~ 17948072 (-)
G1222602 NA non-coding upstream 58372 18004264 ~ 18004390 (-)
G1222629 NA non-coding upstream 87486 18033378 ~ 18033747 (-)
G1222653 NA non-coding upstream 102495 18048387 ~ 18048644 (-)
G1222656 NA non-coding upstream 105078 18050970 ~ 18051227 (-)
G1219208 NA other downstream 2622767 15317793 ~ 15318160 (-)
G1218808 NA other downstream 2946548 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3383546 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4226050 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1889986 19835878 ~ 19836319 (-)
G1225499 NA other upstream 2187819 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2375886 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2519838 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2777145 20723037 ~ 20723236 (-)

Expression


Co-expression Network