LOC110488938 (LOC106604531)


Basic Information

Item Value
gene id LOC110488938
gene name LOC106604531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18225268 ~ 18230133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561421.2
ATCGAATTTAGAGGAAGTAAAATCTCCAAGATTGAAGCTCGCAGTCAACCAGGAGTACTGTTAAAGTAGATAACATTTAGAATTGtcaatttttttttagaaatgtctaACGCAACACCAGTGACCAAGCCTTCAAACAAAGAAAACCCCCGTGTCTTCCTTGATGTAGACATCGGTGGTGAAAGAGTTGGCCGAATCGTGTTCGAACTGTTTGCTGATGTTGTCCCCAAAACTGCTGAAAACTTTCGAGCACTCTGTACTGGTGAGAAGGGAACTGGCAAAACCACAGGGAAACCACTCCATTTCAAAGGATGTCCTTTCCACAGGATCATCAAGCAATTCATGATCCAGGGAGGTGATTTCTCCAACCAGAATGGCACTGGAGGAGAGAGCATCTATGGGGAGAAGTTTGAAGATGAGAACTTCTATTACAAGCACGACAAAGGGGGCTTGCTGAGTATGGCCAATTCTGGACCCGCTACCAATGGCTCCCAGTTTTTTATCACCACTGTGCCTACTGCTCATCTAGACGGCAAACATGTGGTCTTTGGACAAGTCTTGAAGGGGATGGGGCTGGTGAAAACACTGGAGGCCATAGAGACCAACGAGGACACGCCTGTCAAGCCATGTGTAATTGCTGAGTGTGGTGAGCATAAAGATGGCGACAACTGGGGAGTAGCACCGAATGACTGCTCAGGGGACacccatccagactacccagagGACTCCGATGTCGACTTAAAAGATGTTGACAAAATCCTGTCTGCTGCTGAAGATATTAAGAATATTGGGAACAACTTCTTCAAGAACCAAGACTGGCAGTCTGCAATCAAGAAGTACTCCAAAGCTCTCAGGTATCTGGCGCTTGGCGGAGACGAGCAGGAGATTGAGAAGGCCCAAACGAAGCTGGAGCCCACAGTGTTGAGCTGCATTCTCAACACAGCTGCCTGTAAACTGAAGTTGCAGCTCTGGCAGGAAGCCATGGACAGTTGTGACGAGGCACTGGAGTTGAACCAGAAAAACACTAAGGCTCTGTTCAGGAGGGCCCAGGCCTGGCAAGGACTGAAGGAGTACAGTAAAGCCATGAGTGATCTGAAGAAAGCTCAAGAAATTGCCCCGGAGGATAAAGCAATCGGAAACGAGATGAAGAGAGTCCAGATAAAAGTGAAGgaggaaaaggagaaagagaagcaAATCTATTCCAAAATGTTTGCGTGAAGGTATCAGACAATAATTTGATATAGGCCTATTCTTAAAGTCCACTTGCCAATAGTTATTGTTTAGGCAGCTAGCTACAATACAGGTGCAAATTGAAAACCAAGACCATATAATCATATTGTCTGTTTAATGAGTGGCACACAAAGGTAGATGAAAATTAAGTATAGATATGTAAGAAAATGTAATAATTTTTTTTTGAGGAAGCGTAAACCTGTCAGCATTTTGTCAAGAGTATTTCACTATTAATTTCATATTCTTTCATGTTTACTCTGAATAACTACTGTAATAtccctttatttatttttctgaatGTTTAATATAAGCCATAAAGATGAAATGTGGTTGGTTAGTTGACTCTTTCTAGAAATGTCCATACTCCACCTGTATACAATGCAATTAAATACTACCTGTACGTTCAATGAGAGAAGTATGGAGTAAGATACCAAGGCACGGTAAATATTTTATTCACCCACATACATCCTACCCACTAATGACATTATGTACAGTATCTCATAGATCATATGCTGTTATTGCTAATGGCACCTGCAACTAGCTAATGAAATAACCCTCAATTTTGGCACTGATTCGAAGATATTTCGATCCATGTCAATGCAGCTTCTTCTGCTTATGGCATACAAATATATAAAATACTTTTTAGTTGCATTCTGAAAACCGTACATGAACCAAAGTCACTGTTTAATGCCCGTACTTTACAATGTTGACATTCAGTTCCATATCTATGCACACAGTATAGTAGATTCTAAAAGCTGTCTTGGCAGCAAGCCCTgaatgtgtttttgcagacacCACACTTGAGGTTTCTGACCTCACTGCTACAATTTGTGCCTCGTGATATGTCTGAATGAAAAGGGAAATCACATTCCATTGTAGGCTGGTCCTCCGCTGCCTTCGGGCACCACCCAGTTGATGTTCTGGCTGGGGTCCTTGATGTCGCACGTCTTGCAATGCACGCAGTTCTGAGCGTTGATCTGCAACCTCATACCTTCTCCAGTTTCGAGTGGAACGTACTCATATACACCTAGTGAAAGGGGGAATGAAGGGATTTAAGACAAATCTAACTAATACTGTAAGTCTACTCTTGTGGTGACTCATATTTGATTTATCGGGAAACTGGTTTGCAGAGGCCACTACATAGGTTAATGACTGAGAAATGATAGCTATGCAGCCAGAATTACCGCAGGTGTGTGCAGTGCAGTCCTCCCAGACAGTCAATATGTTTGTCACTATTCATTAGATAATGAAATTACATTTCAATGATGATACTActtacaatgaacaaaaatataaacgtaacatgtaaagtatgttggtcctatgtttcatgacctgaaataaaagatcacagaaat

Function

NR:

description
peptidyl-prolyl cis-trans isomerase D-like

GO: NA

KEGG:

id description
K05864 PPID, CYPD; peptidyl-prolyl isomerase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561421.2 True 2588 mRNA 0.42 10 18225268 18230133

Neighbor

gene id symbol gene type direction distance location
gask1b fam198b coding downstream 211527 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 279376 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 447671 17704072 ~ 17777597 (-)
ctso ctso coding downstream 590687 17625840 ~ 17634581 (-)
aga aga coding downstream 806619 17413147 ~ 17418649 (-)
LOC110487745 NA coding upstream 10546 18240679 ~ 18242800 (-)
LOC110488940 LOC106604535 coding upstream 354247 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 913997 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 960108 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 967391 19197524 ~ 19203622 (-)
G1222979 NA non-coding downstream 26150 18197858 ~ 18199118 (-)
G1222974 NA non-coding downstream 27512 18196898 ~ 18197756 (-)
G1222957 LOC106604530 non-coding downstream 46190 18177675 ~ 18179078 (-)
G1222656 NA non-coding downstream 174041 18050970 ~ 18051227 (-)
G1222653 NA non-coding downstream 176624 18048387 ~ 18048644 (-)
G1223101 NA non-coding upstream 153829 18383962 ~ 18384745 (-)
G1223107 NA non-coding upstream 166974 18397107 ~ 18400718 (-)
G1223164 NA non-coding upstream 217065 18447198 ~ 18447461 (-)
G1223165 NA non-coding upstream 218050 18448183 ~ 18448433 (-)
G1223189 NA non-coding upstream 228915 18459048 ~ 18459249 (-)
asb5a LOC101464329 other downstream 826033 17395671 ~ 17399280 (-)
G1219208 NA other downstream 2907108 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3230889 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3667887 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4510391 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1605745 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1903578 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2091645 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2235597 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2492904 20723037 ~ 20723236 (-)

Expression


Co-expression Network