LOC110488948 (ccna2)


Basic Information

Item Value
gene id LOC110488948
gene name ccna2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19190241 ~ 19195081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943105.1
TCGACTTCGGTTGTGATTGGCCGTTTCAATAGTCGCGGGCTACTTGAACTCAGAACAAGCAACTTTTCTGCATTAATATATATTTTCAGAGGACAAGGGACTGTATCTAGGTAAAGGTTGCGCGGTGGTTAGCTACATTTATTGGATTTAGTCAAAGAGCATGGCGAGCTAATGCCGGTTTTCATGCAGAAGATGATTTTGTCTCAACGTTAAGTAGTGTTTTAAATTTGCAGCTCAGAATTACGTTGTTGCCATCTCAACACCCCAGACTTGTCTGTGCGATATCTtatgctactgtagctagcttgctaacacaGCAAAGTGGACGTTTCTGCAGTGACTTGTTTGAGCCAGAAACTGAGAATAACAACATGTCAGAAACAAACCAAGGACAAGGAAGCGCGGTTGACGTTCCGCTGCCAGAATACCAAAACCAAGAGAATATGCTGTCCAGACTGAGGGGTCCAATCAAAAACCGGGCAGACAACCAGGAGAACATTGTCCCCAAAGCCTCACAGAGAACAGTTCTGGGAGGTTTGCAAAACAATCAATGCAGCAATCCTCAAAACACAACACAGTTGCTGTCCTGCAAAAATGAAAGTGAAGTACCTAGAAGTTATGCAGAGAAGCTGAGTACCAAGCCGCCAGCTTTTCAGATTCACCTGGATGAGCCAGATTCGGCTTTCTCCAGGAAAATGGTGTCCTTCAAAGCCAACCCTTCCATAGAGATGTACCCCCTGAAACTGAACCCTACAGTTACCTGTCTCAGGCAGCCTCTGGCTTCTCTTGACATACCTGCCACATGTGTGTCTAACATGGATCTTAGTTTTGGTGATTGTCCCATGGATATGTCAGTTATTGAAGGGGAAGAGAAGCCAGTTCACATGACTGCGGCAACAGAGTATGCTTCAGAAATACATGCGCATCTCAGGGAAATGGAGGTTAAGTCCAGACCAAAAGCAGGCTACATGAAAAAGCAGCCAGACATAACCTACAGCATGCGGGCTATCCTTGTTGACTGGCTGGTGGAGGTTGGTGAGGAGTACAAGCTCCAGAACGAGACTCTATACCTTGCTGTGAACTACATTGACCGTTTCCTGTCTTCCATGTCAGTCCTGCGGGGGAAGCTGCAGTTGGTCGGAACCGCCGCCATGCTGTTGGCCTCGAAGTTTGAAGAGATCTACCCCCCAGAGGTGGCAGAGTTCGTTTATATCACGGACGACACCTACACAAAAAAGCAAGTGTTGCGAATGGAGCATCTGGTGCTTAAAGTGCTCTCCTTTGATTTGGCCTCTCCCACCATCAACCAGTTTCTCACCCAGTACTTTCTCACCCAGCCTGTCAGCAACAAGGTGGAGAGCTTGTCAAGGTTCCTAGGGGAGCTCAGTCTAGTAGACTCGGACCCATTCCTGAAGTACCTCCCCTCTCAGACTGCTGCTGCCGCCTTTGTTTTGGCAAACCACACTATAACAGGAAGCTCATGGTCCAAGTCTCTGGCAGAGGTGACTGGCAACTCTTTAGAAGACCTGATGCCATGCATAGAGGATCTGCACCAAATGTACCGCAATGCTGCTACGCATGCACAGCAGTCGGTGAGGGAGAAGTACAAGTGTGCCAAgtACCAAGAGGTCTCTCTCATCGAGCCCCCGGTGAAACTGTCTTTGGAATGATTTTTTTTgtgcatatttattttttaatacacGTCTCATAATGCCAGAATTTCAATAACTGAACTCATGGCTGCAGTCTTGGATGTGGACAACATttttagatttttaaaaaatgtgcatTTTATATGTACATTCCTGTAGGATGGTTATTTTATGCTTGATGCAGCCCTGGGCTTTAATGTCGTTAATCAAGCAATGTCATGTTTCTCTTCTTACTAGACAAATGTTTGCAGTGTTTTTTAACTGCTTAAAAGCTGTAAAGATTAGTCTCACTTTCTGTATCTTTGTAATAAACCTGTAGCTTATTTTCCCCTCTGCAACTAATAGATACTTTTGAATATTTCCTGACAAATCTGGCTAACCATGGTTTGGTTTTCTATGACAACTTTACTTTATATGGGTTGTCTGGGTGTGGttgatttgttatttttattacaCAAGTTAATTCTGGGTAATGATATTCTAGTATAATTTGGAAGTTTAAATCTAGCTAATTTGACTCGACATACTGCGAAAGTTTGTCTGCCTCTTTTCTTTATCTTAAATCACTTGTCTCATGTCTTGACATTCATTGGTTAACAATTAATGACTCATCCGCTCTGTATAATGTCTCTTGTAAATAAATTCCATTCCCACA
>XM_036943106.1
AGTTATATCAGCCGCCGTAGATTCGTGACGTAATTTTCGACTTCGGTTGTGATTGGCCGTTTCAATAGTCGCGGGCTACTTGAACTCAGAACAAGCAACTTTTCTGCATTAATATATATTTTCAGAGGACAAGGGACTGTATCTAGCAAAGTGGACGTTTCTGCAGTGACTTGTTTGAGCCAGAAACTGAGAATAACAACATGTCAGAAACAAACCAAGGACAAGGAAGCGCGGTTGACGTTCCGCTGCCAGAATACCAAAACCAAGAGAATATGCTGTCCAGACTGAGGGGTCCAATCAAAAACCGGGCAGACAACCAGGAGAACATTGTCCCCAAAGCCTCACAGAGAACAGTTCTGGGAGGTTTGCAAAACAATCAATGCAGCAATCCTCAAAACACAACACAGTTGCTGTCCTGCAAAAATGAAAGTGAAGTACCTAGAAGTTATGCAGAGAAGCTGAGTACCAAGCCGCCAGCTTTTCAGATTCACCTGGATGAGCCAGATTCGGCTTTCTCCAGGAAAATGGTGTCCTTCAAAGCCAACCCTTCCATAGAGATGTACCCCCTGAAACTGAACCCTACAGTTACCTGTCTCAGGCAGCCTCTGGCTTCTCTTGACATACCTGCCACATGTGTGTCTAACATGGATCTTAGTTTTGGTGATTGTCCCATGGATATGTCAGTTATTGAAGGGGAAGAGAAGCCAGTTCACATGACTGCGGCAACAGAGTATGCTTCAGAAATACATGCGCATCTCAGGGAAATGGAGGTTAAGTCCAGACCAAAAGCAGGCTACATGAAAAAGCAGCCAGACATAACCTACAGCATGCGGGCTATCCTTGTTGACTGGCTGGTGGAGGTTGGTGAGGAGTACAAGCTCCAGAACGAGACTCTATACCTTGCTGTGAACTACATTGACCGTTTCCTGTCTTCCATGTCAGTCCTGCGGGGGAAGCTGCAGTTGGTCGGAACCGCCGCCATGCTGTTGGCCTCGAAGTTTGAAGAGATCTACCCCCCAGAGGTGGCAGAGTTCGTTTATATCACGGACGACACCTACACAAAAAAGCAAGTGTTGCGAATGGAGCATCTGGTGCTTAAAGTGCTCTCCTTTGATTTGGCCTCTCCCACCATCAACCAGTTTCTCACCCAGTACTTTCTCACCCAGCCTGTCAGCAACAAGGTGGAGAGCTTGTCAAGGTTCCTAGGGGAGCTCAGTCTAGTAGACTCGGACCCATTCCTGAAGTACCTCCCCTCTCAGACTGCTGCTGCCGCCTTTGTTTTGGCAAACCACACTATAACAGGAAGCTCATGGTCCAAGTCTCTGGCAGAGGTGACTGGCAACTCTTTAGAAGACCTGATGCCATGCATAGAGGATCTGCACCAAATGTACCGCAATGCTGCTACGCATGCACAGCAGTCGGTGAGGGAGAAGTACAAGTGTGCCAAgtACCAAGAGGTCTCTCTCATCGAGCCCCCGGTGAAACTGTCTTTGGAATGATTTTTTTTgtgcatatttattttttaatacacGTCTCATAATGCCAGAATTTCAATAACTGAACTCATGGCTGCAGTCTTGGATGTGGACAACATttttagatttttaaaaaatgtgcatTTTATATGTACATTCCTGTAGGATGGTTATTTTATGCTTGATGCAGCCCTGGGCTTTAATGTCGTTAATCAAGCAATGTCATGTTTCTCTTCTTACTAGACAAATGTTTGCAGTGTTTTTTAACTGCTTAAAAGCTGTAAAGATTAGTCTCACTTTCTGTATCTTTGTAATAAACCTGTAGCTTATTTTCCCCTCTGCAACTAATAGATACTTTTGAATATTTCCTGACAAATCTGGCTAACCATGGTTTGGTTTTCTATGACAACTTTACTTTATATGGGTTGTCTGGGTGTGGttgatttgttatttttattacaCAAGTTAATTCTGGGTAATGATATTCTAGTATAATTTGGAAGTTTAAATCTAGCTAATTTGACTCGACATACTGCGAAAGTTTGTCTGCCTCTTTTCTTTATCTTAAATCACTTGTCTCATGTCTTGACATTCATTGGTTAACAATTAATGACTCATCCGCTCTGTATAATGTCTCTTGTAAATAAATTCCATTCCCACA

Function

symbol description
ccna2 Enables cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; primordial germ cell; and tail bud. Orthologous to human CCNA2 (cyclin A2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06627 CCNA; cyclin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943105.1 False 2307 mRNA 0.44 9 19190241 19195045
XM_036943106.1 True 2136 mRNA 0.44 9 19190241 19195081

Neighbor

gene id symbol gene type direction distance location
LOC110487747 anxa5 coding downstream 25897 19144130 ~ 19164344 (-)
LOC110488940 LOC106604535 coding downstream 415874 18584380 ~ 18774367 (-)
LOC110487745 NA coding downstream 947441 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 960108 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 1176500 18004553 ~ 18013741 (-)
bbs7 bbs7 coding upstream 2443 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 8697 19203778 ~ 19211568 (-)
LOC118938702 NA coding upstream 28693 19223774 ~ 19239151 (-)
limch1b LOC106604545 coding upstream 88117 19283198 ~ 19429045 (-)
LOC118938704 NA coding upstream 525879 19720960 ~ 19722934 (-)
G1224308 LOC106613263 non-coding downstream 8296 19181622 ~ 19181945 (-)
G1224306 NA non-coding downstream 10296 19179605 ~ 19179945 (-)
G1224305 NA non-coding downstream 12631 19177004 ~ 19177610 (-)
G1224240 NA non-coding downstream 122916 19066584 ~ 19067325 (-)
G1224185 NA non-coding downstream 194438 18995459 ~ 18995803 (-)
G1224320 NA non-coding upstream 25586 19220667 ~ 19309671 (-)
G1224344 NA non-coding upstream 57324 19252405 ~ 19308550 (-)
G1224534 NA non-coding upstream 305517 19500598 ~ 19500829 (-)
G1224547 NA non-coding upstream 311928 19507009 ~ 19507209 (-)
G1224564 NA non-coding upstream 323998 19519079 ~ 19519366 (-)
asb5a LOC101464329 other downstream 1791006 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3872081 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4195862 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4632860 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5475364 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 640797 19835878 ~ 19836319 (-)
G1225499 NA other upstream 938630 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1126697 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1270649 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1527956 20723037 ~ 20723236 (-)

Expression


Co-expression Network