bbs7 (bbs7)


Basic Information

Item Value
gene id bbs7
gene name bbs7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19197524 ~ 19203622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561441.2
GATATTGAAGCTTCTTCAAACGAACAACGTTGTCCATGGTAACGGGTCCAGTGTGCGCGCAGAAGAATCAGATGCTAGTTATTTCGACAACCTTAATTTTCTAACTCCTATAATGTCGataaactagctaacgttatggtTGAACTAAATCAAACAACGATGTGGCGGCTATATAGAATATACTAATACGTCAGAGTATGCAACGTGCATTCTGACTACAGTTTTAGCGAGACAGCTAAATTAGCCAACGAGGCTAATCCCTATTACAGAATAATCCCAATCTGACAAAATGCTCTTTGTTCACCTCGCATGTTAGCCAGCtatctttattagctagctaacgttgattTAGATACCTGTAACGCCGGtctgatttttgttgttgttgattgtaTTGATTGTAAACGGTTAACGTTACTGGACAGACACCTTTTGGATAATTAAGCGAACGTTATTAGATAGCGAGCTAATCAATTGAATTGCATACTAGTTTTTGCTGACCAAACACTCACATCAAGCCAAGAACATCATGGAGATAAACCTCAACCGAATTGATTATCTACAGGTTGGTGTGATATCTCAGAAAACCATGAGGCTCCTCCCTGCCTTGGGACGCAAAGCAACCCAAAAGGTTGCTGTTGCTGATCATGATGGTGTGATAACTTGTTTTGGGATGAAAAAAGGAGAAGCTGTACCTGTGTTCAAGACTTTGCCAGGGCAGAAGATAACAAGGCTGGACCTTGGTGGGGCTCTTGGAACCCCACAGGAGAAGATCTTTGTGTGTGCTGGCTCGGAAGTGAAGGGATATACCAAGAAAGGCAAACAGTTCCTGTCCTTTGAGGCCAACCTTACAGAAAGCATCAATGCCATGCACGTTTCAGGAGCAGACCTTTTTGTGTGTGCGAGTTAcatctacaaccactactgtGACTGCAAGGATCAAGACTACTACCTGTCTGGAGACAAAATTAATGACATTGTGTGCTTGCCTGCTGAGAACTTGGGCCGCATTGTCCCTGTGTTGGCATGTCAAGACCGAGTTCTCAGAGTGTTGCAGGGATCTGAGCTTGTGTATGATATTGAAGTCCCTGGTCCTCCCTCAGTTTTGGAGCTGTACAATCGAGATGGAGGGACTAATGGcgaagacattctctatggaactGTGGATGGCAAACTGGGACTGATTAGGATAACtgattcctcttcctcttctaaATGGGAGATTGATAATGAGAAAAAGAAAGGAGGTGTTTTGTGCATCGACACGTATGATATCCTGGGTGACGGGGTGAAAGACATCCTTGTTGGCAGGGATGATGGGACAGTGGAGGTCTATGGGTTTGACAGCTCCAATGAGCCCACATTGCGCTTTGAGCATGTGTTATTGGAGAGCGTCACCTCTATCCAGGGTGGCTGTGTTGGGAAGGAGTCTTATGACGAGGTTCTGACAGCCACGTACACAGGATGGGTGACAGGGCTGACTACAGAGCCCCAGCAGGCAGAGGCAGGCCCTGGAGATGAAGTCAAGATGAGTCGGGAGACCCAGAGCAAAGTGGCAGCTCTCAGGGCAGAGCTAGACCAACTGCAGATGAAGGTCGTTCAGGGCCGTGAGAAGTACCAGCAAACCGCGCAGTCTAGTACGGCGGTCTCTGCCATGCCCGTGTTCAGCATCAATGACAAGTTCACCCTGTGTCAGGATGATGCCAGCTACAGCCTGACCCTGGAAGTGCAGACAGCCATCGACAATCTGCTGCTGCAGAGTGATGTACCAATTGATCTGCTGGATGTCGACAAGAACTCTGCTGTCGTGAGTTTCAGCGAATGTGATTCAGAGCAGCCAAAAGGCAATTTTCTCCTCGTTACGTACAGATGCCAAGCAAATACTACACGGCTTGAGCTGAAGGTGAGGTCTATTGAGGGCCAATATGGCACCCTACAGGCCTACATCACCCCACGCCTGCAGCCCAAGACCTGTCAGGTACGCCAGTACCTCATCAAACCTCTGTCCCTTCACCAGAGAACTCACACCATTGAACAGGACAGACCCATGAACACTTTGAGTCTAGTTGGCCAATTCAGCTTTGCAGAGATCCACTCCTGGGTCCTCTTCTGCTTGCCAGAGGTCCCAGAGAAGACTCCAGCAGGGGAGAATATCACCTTCTACTTCCAGAACACTTTCCTTGGAACGCAGCTGGAAGCCACGTACTGTAAAGGGGAAGGCCACTTCAAGTCTGACAACATTTCCACCATCTCCATACTGAAGGATGTCCTCTCCAAAGAAGCCACCAAAAGAAAAAACAATCTCGATATTTCTTATGATATCAATGACGATTCAGTGGGCCACACACTCAAGATGATTCATCCGAAGCTTGAGTATCAGCTGCTATTGGCCAAAAAGGTTCAGCTGATTGACGCATTAAAAgagCTTCAGGTTCACGAGGGGAATGCGGACTTCCTCATTCCTGAATATCGTAACATTCTAGACGAATCTGCCTATCTGCTAGAGGAATACAAGAAACAACCAGCTCACCTGGAAAGACTTTATGGTATGATAACGGACCTCTTCATCgacaaattcaaattcaaagGACAGAATGTGAAGACAAAGGTGTCATTGCTGCTGGAAGTTTTGGATAACTACGATTTGGATTCTTTGATGAATTTCTTCAATGAGGCATAATATCAAACTTGAGCAAAGAGGATGCAAACTTTTACACTTTATTTGTGATAGCTTTTGTTTTGTTTAGAGTACAGCGTTTACTTTCCAGCTGTGTCTTTTTTTTGTGTAAGATACTAGAATTATGTTACATAATCTGAATTCTTTATGTCTAAAGCCATATTCTGTTGGCCtagctatatacagtgcattggaaaatattcagacccctttcctttttccacattttgttatgttattatagccttattctaaaatggattaaaatagttttttccctcatcaatctacacactaccccataatgacaaagcgaaacaggtttttagaaatgtttgcaaatgtatgaaaaataaataaataccttaattat
>XM_021561442.2
TGATATTGAAGCTTCTTCAAACGAACAACGTTGTCCATGGTAACGGGTCCAGTGTGCGCGCAGAAGAATCAGATGCTAGTTATTTCGACAACCTTAATTTTCTAACTCCTATAATGTCGataaactagctaacgttatggtTGAACTAAATCAAACAACGATGTGGCGGCTATATAGAATATACTAATACGTCAGAGTATGCAACGTGCATTCTGACTACAGTTTTAGCGAGACAGCTAAATTAGCCAACGAGGCTAATCCCTATTACAGAATAATCCCAATCTGACAAAATGCTCTTTGTTCACCTCGCATGTTAGCCAGCtatctttattagctagctaacgttgattTAGATACCTGTAACGCCGGtctgatttttgttgttgttgattgtaTTGATTGTAAACGGTTAACGTTACTGGACAGACACCTTTTGGATAATTAAGCGAACGTTATTAGATAGCGAGCTAATCAATTGAATTGCATACTAGTTTTTGCTGACCAAACACTCACATCAAGCCAAGAACATCATGGAGATAAACCTCAACCGAATTGATTATCTACAGGTTGGTGTGATATCTCAGAAAACCATGAGGCTCCTCCCTGCCTTGGGACGCAAAGCAACCCAAAAGGTTGCTGTTGCTGATCATGATGGTGTGATAACTTGTTTTGGGATGAAAAAAGGAGAAGCTGTACCTGTGTTCAAGACTTTGCCAGGGCAGAAGATAACAAGGCTGGACCTTGGTGGGGCTCTTGGAACCCCACAGGAGAAGATCTTTGTGTGTGCTGGCTCGGAAGTGAAGGGATATACCAAGAAAGGCAAACAGTTCCTGTCCTTTGAGGCCAACCTTACAGAAAGCATCAATGCCATGCACGTTTCAGGAGCAGACCTTTTTGTGTGTGCGAGTTAcatctacaaccactactgtGACTGCAAGGATCAAGACTACTACCTGTCTGGAGACAAAATTAATGACATTGTGTGCTTGCCTGCTGAGAACTTGGGCCGCATTGTCCCTGTGTTGGCATGTCAAGACCGAGTTCTCAGAGTGTTGCAGGGATCTGAGCTTGTGTATGATATTGAAGTCCCTGGTCCTCCCTCAGTTTTGGAGCTGTACAATCGAGATGGAGGGACTAATGGcgaagacattctctatggaactGTGGATGGCAAACTGGGACTGATTAGGATAACtgattcctcttcctcttctaaATGGGAGATTGATAATGAGAAAAAGAAAGGAGGTGTTTTGTGCATCGACACGTATGATATCCTGGGTGACGGGGTGAAAGACATCCTTGTTGGCAGGGATGATGGGACAGTGGAGGTCTATGGGTTTGACAGCTCCAATGAGCCCACATTGCGCTTTGAGCATGTGTTATTGGAGAGCGTCACCTCTATCCAGGGTGGCTGTGTTGGGAAGGAGTCTTATGACGAGGTTCTGACAGCCACGTACACAGGATGGGTGACAGGGCTGACTACAGAGCCCCAGCAGGCAGAGGCAGGCCCTGGAGATGAAGTCAAGATGAGTCGGGAGACCCAGAGCAAAGTGGCAGCTCTCAGGGCAGAGCTAGACCAACTGCAGATGAAGGTCGTTCAGGGCCGTGAGAAGTACCAGCAAACCGCGCAGTCTAGTACGGCGGTCTCTGCCATGCCCGTGTTCAGCATCAATGACAAGTTCACCCTGTGTCAGGATGATGCCAGCTACAGCCTGACCCTGGAAGTGCAGACAGCCATCGACAATCTGCTGCTGCAGAGTGATGTACCAATTGATCTGCTGGATGTCGACAAGAACTCTGCTGTCGTGAGTTTCAGCGAATGTGATTCAGAGCCAAAAGGCAATTTTCTCCTCGTTACGTACAGATGCCAAGCAAATACTACACGGCTTGAGCTGAAGGTGAGGTCTATTGAGGGCCAATATGGCACCCTACAGGCCTACATCACCCCACGCCTGCAGCCCAAGACCTGTCAGGTACGCCAGTACCTCATCAAACCTCTGTCCCTTCACCAGAGAACTCACACCATTGAACAGGACAGACCCATGAACACTTTGAGTCTAGTTGGCCAATTCAGCTTTGCAGAGATCCACTCCTGGGTCCTCTTCTGCTTGCCAGAGGTCCCAGAGAAGACTCCAGCAGGGGAGAATATCACCTTCTACTTCCAGAACACTTTCCTTGGAACGCAGCTGGAAGCCACGTACTGTAAAGGGGAAGGCCACTTCAAGTCTGACAACATTTCCACCATCTCCATACTGAAGGATGTCCTCTCCAAAGAAGCCACCAAAAGAAAAAACAATCTCGATATTTCTTATGATATCAATGACGATTCAGTGGGCCACACACTCAAGATGATTCATCCGAAGCTTGAGTATCAGCTGCTATTGGCCAAAAAGGTTCAGCTGATTGACGCATTAAAAgagCTTCAGGTTCACGAGGGGAATGCGGACTTCCTCATTCCTGAATATCGTAACATTCTAGACGAATCTGCCTATCTGCTAGAGGAATACAAGAAACAACCAGCTCACCTGGAAAGACTTTATGGTATGATAACGGACCTCTTCATCgacaaattcaaattcaaagGACAGAATGTGAAGACAAAGGTGTCATTGCTGCTGGAAGTTTTGGATAACTACGATTTGGATTCTTTGATGAATTTCTTCAATGAGGCATAATATCAAACTTGAGCAAAGAGGATGCAAACTTTTACACTTTATTTGTGATAGCTTTTGTTTTGTTTAGAGTACAGCGTTTACTTTCCAGCTGTGTCTTTTTTTTGTGTAAGATACTAGAATTATGTTACATAATCTGAATTCTTTATGTCTAAAGCCATATTCTGTTGGCCtagctatatacagtgcattggaaaatattcagacccctttcctttttccacattttgttatgttattatagccttattctaaaatggattaaaatagttttttccctcatcaatctacacactaccccataatgacaaagcgaaacaggtttttagaaatgtttgcaaatgtatgaaaaataaataaataccttaattat

Function

symbol description
bbs7 Acts upstream of or within several processes, including Kupffer's vesicle development; embryonic morphogenesis; and establishment of pigment granule localization. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in cytoskeleton; membrane; and neuron projection. Is expressed in brain; eye; fin; and otic placode. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 7. Orthologous to human BBS7 (Bardet-Biedl syndrome 7).

NR:

description
Bardet-Biedl syndrome 7 protein isoform X2

GO: NA

KEGG:

id description
K16749 BBS7; Bardet-Biedl syndrome 7 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561441.2 False 3050 mRNA 0.44 19 19197524 19203621
XM_021561442.2 True 3048 mRNA 0.44 19 19197524 19203622

Neighbor

gene id symbol gene type direction distance location
LOC110488948 ccna2 coding downstream 2443 19190241 ~ 19195081 (-)
LOC110487747 anxa5 coding downstream 33180 19144130 ~ 19164344 (-)
LOC110488940 LOC106604535 coding downstream 423157 18584380 ~ 18774367 (-)
LOC110487745 NA coding downstream 954724 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 967391 18225268 ~ 18230133 (-)
tmem33 LOC106604543 coding upstream 156 19203778 ~ 19211568 (-)
LOC118938702 NA coding upstream 20152 19223774 ~ 19239151 (-)
limch1b LOC106604545 coding upstream 79576 19283198 ~ 19429045 (-)
LOC118938704 NA coding upstream 517338 19720960 ~ 19722934 (-)
LOC110488956 LOC106604549 coding upstream 534585 19738207 ~ 19753902 (-)
G1224308 LOC106613263 non-coding downstream 15579 19181622 ~ 19181945 (-)
G1224306 NA non-coding downstream 17579 19179605 ~ 19179945 (-)
G1224305 NA non-coding downstream 19914 19177004 ~ 19177610 (-)
G1224240 NA non-coding downstream 130199 19066584 ~ 19067325 (-)
G1224185 NA non-coding downstream 201721 18995459 ~ 18995803 (-)
G1224320 NA non-coding upstream 17045 19220667 ~ 19309671 (-)
G1224344 NA non-coding upstream 48783 19252405 ~ 19308550 (-)
G1224534 NA non-coding upstream 296976 19500598 ~ 19500829 (-)
G1224547 NA non-coding upstream 303387 19507009 ~ 19507209 (-)
G1224564 NA non-coding upstream 315457 19519079 ~ 19519366 (-)
asb5a LOC101464329 other downstream 1798289 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3879364 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4203145 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4640143 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5482647 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 632256 19835878 ~ 19836319 (-)
G1225499 NA other upstream 930089 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1118156 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1262108 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1519415 20723037 ~ 20723236 (-)

Expression


Co-expression Network