ndufa1 (LOC106611562)


Basic Information

Item Value
gene id ndufa1
gene name LOC106611562
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20315512 ~ 20316866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942651.1
agccattTTGAGACATCTCTGATATAATTGTTTTTCTCAATTTCCTGGATGTTACGTGTCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTAA
>NM_001160667.2
GGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTG
>TU1398779
TCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTAACCAGTTTCTTTGTGTAGTTACTGCTGATTATGTTGAAAACCGTATGAAATAACACGTCAGGTTTACAGAGTTTTGAATGTATTCAATAGACAATTTGTAACTACTTTCTATGGCTCC
>TU1398782
TGCACGACGGGCTATCTAACTCCcgcctatcctttctttggattggtggatagaGCTCATTATTGTAATCATGCTTTAATATTTGACgagggttgttgacgtcaacTGCCTGTATTCAATTGAAATGCGATGCTACTAACCTCGTgacatgaatatgcatagccattTTGAGACATCTCTGATATAATTGTTTTTCTCAATTTCCTGGATGTTACGTGTCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTAACCAGTTTCTTTGTGTAGTTACTGCTGATTATGTTGAAAACCGTATGAAATAAC
>TU1398784
TTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTAACCAGTTTCTTTGTGTAGTTACTGCTGATTATGTTGAAAACCGTATGAAATAAC
>TU1398775
TTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398776
catagccattTTGAGACATCTCTGATATAATTGTTTTTCTCAATTTCCTGGATGTTACGTGTCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398777
TCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398778
GTTGATTGGCTTTTCGGAGaccaaagattatggatatacGGACGAGATACATCTCTCTACGCCCTAACAATTGGAGCCGTTGTCCACAAAGCTGCACGACGGGCTATCTAACTCCcgcctatcctttctttggattggtggatagaGCTCATTATTGTAATCATGCTTTAATATTTGACgagggttgttgacgtcaacTGCCTGTATTCAATTGAAATGCGATGCTACTAACCTCGTgacatgaatatgcatagccattTTGAGACATCTCTGATATAATTGTTTTTCTCAATTTCCTGGATGTTACGTGTCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398780
TGCACGACGGGCTATCTAACTCCcgcctatcctttctttggattggtggatagaGCTCATTATTGTAATCATGCTTTAATATTTGACgagggttgttgacgtcaacTGCCTGTATTCAATTGAAATGCGATGCTACTAACCTCGTgacatgaatatgcatagccattTTGAGACATCTCTGATATAATTGTTTTTCTCAATTTCCTGGATGTTACGTGTCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGGTTGGTCGACATTTTGTTAGCCTTTCTTAGCAAGTTAGCAAAATAAACTGTCGTATTTCGCGTGTCTGACAAATAAACGCCTTTGTCACTTGCGTCACCCACATTGCAGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398783
TTCCGGAAGTGAACGGATGACCGTGAACTATTCGGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA
>TU1398785
TCCTACTTATAccagtacactcgtaacaacttAAGCATTACGAAACTTATATTAGATCAACCTCACGAAGCTAAtaaaccattttctttttttggggggcaaaTTCGACACTCATTGACTTGCATTGAAACACTCCTTGGTTGGTGGGCGAAACATCGAAAAAACGTCACCTGCTTCGAGCGAGACAGATTTTCCGCGGAGTTGGGCCTCTCTCTTCCGCTTCCTCAATGTGAAACTTCCGGAAGTGAACGGATGACCGTGAACTATTCGGCTATGTGGTATGAAATTCTTCCCGGTCTCGGAGTCATGACTGTTTGTCTCATCCTTCCTGGGGTTTTCACTGCACAGATCCACAAACTCACCAACGGGGGGAAGGAAAAGAGAATCGCCCGGGTTCCATATCAGTGGTatctgatggagagagacagacgtgTGTCAGGAGTGGATTTGTATTACAAATCGAAGGGACTTGAGAATATCCACTGATCCCAGATCTCACCTATGGAATGGATTTCTGTCAAGAATTCGTTGTACATTAAAAGTTATGTATTGTCTGAATTA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942651.1 False 620 mRNA 0.43 4 20315629 20316614
NM_001160667.2 False 425 mRNA 0.44 3 20315635 20316316
TU1398779 False 788 lncRNA 0.42 3 20315512 20316556
TU1398782 False 942 lncRNA 0.42 3 20315576 20316774
TU1398784 False 488 lncRNA 0.43 3 20315576 20316320
TU1398775 False 434 lncRNA 0.44 3 20315630 20316320
TU1398776 False 731 lncRNA 0.43 3 20315630 20316617
TU1398777 False 670 lncRNA 0.44 3 20315630 20316556
TU1398778 False 980 lncRNA 0.43 3 20315630 20316866
TU1398780 False 888 lncRNA 0.43 3 20315630 20316774
TU1398783 False 325 lncRNA 0.45 4 20315630 20316320
TU1398785 True 561 lncRNA 0.44 4 20315630 20316556

Neighbor

gene id symbol gene type direction distance location
zbtb33 LOC106604440 coding downstream 7186 20304374 ~ 20308443 (-)
LOC110488967 LOC106604437 coding downstream 41980 20265984 ~ 20273649 (-)
mcts1 tma20 coding downstream 100121 20206253 ~ 20215508 (-)
LOC110488962 LOC106604433 coding downstream 150567 20135091 ~ 20165062 (-)
LOC118938705 NA coding downstream 185375 20115525 ~ 20130254 (-)
sowahd LOC106604443 coding upstream 10112 20325473 ~ 20331673 (-)
LOC110488978 ube2a coding upstream 64290 20380904 ~ 20386061 (-)
tnmd LOC106604450 coding upstream 159593 20476207 ~ 20564889 (-)
trnaa-ugc-63 NA coding upstream 390931 20707545 ~ 20707619 (-)
diaph2 LOC106604453 coding upstream 949513 21266127 ~ 21960003 (-)
G1225514 NA non-coding downstream 6665 20277533 ~ 20308964 (-)
G1225589 NA non-coding downstream 11836 20300613 ~ 20303793 (-)
G1225584 LOC106604438 non-coding downstream 24630 20289822 ~ 20290999 (-)
G1225582 NA non-coding downstream 28020 20286839 ~ 20287609 (-)
G1225576 NA non-coding downstream 39358 20276029 ~ 20276271 (-)
G1225615 NA non-coding upstream 74108 20390722 ~ 20391285 (-)
G1225726 NA non-coding upstream 281851 20598465 ~ 20598774 (-)
G1225750 NA non-coding upstream 307912 20624526 ~ 20624775 (-)
G1225754 NA non-coding upstream 311876 20628490 ~ 20628741 (-)
G1225499 NA other downstream 181576 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 479310 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 2916394 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4997469 15317793 ~ 15318160 (-)
G1218808 NA other downstream 5321250 14993820 ~ 14994379 (-)
G1225505 upf3b other upstream 5164 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 149116 20465730 ~ 20470523 (-)
G1225875 NA other upstream 406423 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1911705 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3553344 23869958 ~ 23873564 (-)

Expression


Co-expression Network