LOC110488978 (ube2a)


Basic Information

Item Value
gene id LOC110488978
gene name ube2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20380904 ~ 20386061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561488.2
gaagaagaagaagaagaagaaacaaataaagaaaaaaagaaCCATACCAATACTCACCCCTCTTTTCCTTGTGAGTGGTAACGTTAGTAGTGGCTAGCCCAGCCAGCTCCTGTCTGAGGGGGAGAAAGACTCGTGGGAAATATAATCATTACTGTGAAAATCGTTTGTTTCAAAACGTGTGACTTGCAACCATATGCGTACGTTTTAGTTCAACTGAATAAGATGTCAACTCCAGCAAGACGACGTTTAATGAGAGATTTTAAGCGGCTTCAAGAGGACCCTCCTGCAGGAGTTAGTGGAGCCCCGTCGGAAAACAATATAATGGTATGGAATGCCGTAATTTTTGGCCCAGAGGGAACACCTTTTGAAGATGGAACTTTCAAACTCACAATAGAATTCACAGAGGAATACCCTAATAAGCCTCCAACTGTGCGTTTTGTCTCCAAAATGTTTCATCCAAACGTCTACGCAGATGGTAGTATATGCTTGGACATTCTTCAGAACCGCTGGAGTCCAACTTATGATGTTTCTTCAATTCTAACTTCAATACAGTCTTTACTGGATGAGCCGAATCCCAACAGCCCAGCCAACAGCCAGGCGGCTCAGCTATATCAGGAGAACAAGCGGGAGTACGAGAAGCGGGTGTCTGCCATCGTGGAACAGAGTTGGCGTGATTGTTGACCCCCTCACAAAGTATGAACAATATCCAGCCTCAAGTCAAAAAGAGAACAGAAGAAACATATCTCAAAGGAAATGAAATACACATGGTTTGAATCTTTCTCTGCAGTATGTTTGTTTCTCTTCATGCATAATGCTCCTCCTGGACAAGAGCACATCAAAGTAAATGTACCTTGTTATGTCTAGGTTACTTACAATGTAATTTAtccccatttttttattttttatcctggcACATAaaggtactggggggggggggttgagttaCTCTTGTCATTTTAGTGTTTTAAGTCTTTGGCTTGTAGTGTGATTTTGCTGTATTGGTTCAGATAATTGTGTATGTCCAGAAGTTTGAGGGTTTTCGCTGTGGTTTGACTTTTTTGTTTCTAGCTTTCACATGGTTGCCTTTTTGGAGCTATAGTATTCCAACTAAGAAACAATTTGATGAACACCTGTCATGGACTTTTTTCCAACCAATGTCAATTTCAAAACCCTACCTTTTTTACATGCACAACCCATGTTCTTGTTGGGGCTTTGTTTTATGAATTGAATGGCTCTTTGAATGATATCTCCAACAGgactcaagtgttttggaaaggcacatacttGGTGCACTTTTAAATGCAAGTCCTGTAACACTAGTGCAAAAGCATATTTATGATGATTGACAAATTGCCTGCTCTGAGAATTTGTGGTAAACGTTTTCTCATGCACAGAACTCAATGTATCAAGGCAAAGGTTGTCTGTACTTAATGCTCAAATCTTATGGTTTAGATACCCAAATTACTTGGAGTTCCATTTATTTGTATCATTACATAATTACGAATACCACATGGGAATGTTGCAGTGTCCTTAACACCATTCAAACTGTACATTGTCTTGTAAATAAAAATGATACATTCAA

Function

symbol description
ube2a Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 A

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0060135 maternal process involved in female pregnancy biological_process
GO:0033522 histone H2A ubiquitination biological_process
GO:0009411 response to UV biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I biological_process
GO:0001701 in utero embryonic development biological_process
GO:0001741 XY body cellular_component
GO:0005829 cytosol cellular_component
GO:0033503 HULC complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561488.2 True 1582 mRNA 0.40 6 20380904 20386061

Neighbor

gene id symbol gene type direction distance location
sowahd LOC106604443 coding downstream 49532 20325473 ~ 20331673 (-)
ndufa1 LOC106611562 coding downstream 64290 20315512 ~ 20316866 (-)
zbtb33 LOC106604440 coding downstream 72461 20304374 ~ 20308443 (-)
LOC110488967 LOC106604437 coding downstream 107255 20265984 ~ 20273649 (-)
mcts1 tma20 coding downstream 165396 20206253 ~ 20215508 (-)
tnmd LOC106604450 coding upstream 90146 20476207 ~ 20564889 (-)
trnaa-ugc-63 NA coding upstream 321484 20707545 ~ 20707619 (-)
diaph2 LOC106604453 coding upstream 880066 21266127 ~ 21960003 (-)
LOC118938706 NA coding upstream 1296654 21682715 ~ 21684822 (-)
trnat-ugu-36 NA coding upstream 1427124 21813185 ~ 21813258 (-)
G1225514 NA non-coding downstream 71940 20277533 ~ 20308964 (-)
G1225615 NA non-coding upstream 4661 20390722 ~ 20391285 (-)
G1225726 NA non-coding upstream 212404 20598465 ~ 20598774 (-)
G1225750 NA non-coding upstream 238465 20624526 ~ 20624775 (-)
G1225754 NA non-coding upstream 242429 20628490 ~ 20628741 (-)
G1225800 NA non-coding upstream 259460 20645521 ~ 20645807 (-)
G1225505 upf3b other downstream 55685 20321778 ~ 20325219 (-)
G1225499 NA other downstream 246851 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 544585 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 2981669 17395671 ~ 17399280 (-)
G1219208 NA other downstream 5062744 15317793 ~ 15318160 (-)
G1225647 LOC106604448 other upstream 79669 20465730 ~ 20470523 (-)
G1225875 NA other upstream 336976 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1842258 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3483897 23869958 ~ 23873564 (-)
LOC110489025 LOC106604425 other upstream 4170672 24556733 ~ 24561862 (-)

Expression


Co-expression Network