tnmd (LOC106604450)


Basic Information

Item Value
gene id tnmd
gene name LOC106604450
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20476207 ~ 20564889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561493.2
TCTGAAATTACCAATGGAATGAAGTTTGGACTTTTTTCCTTCTAGAGACTCAGTAGTTTTACCAGCTAGGACGGGTGAATCTGAAGGAATTCTCCTCTGGGCTTGCATTATGGAAAATAGCTCTCAGTCCAGCAGTCAACAGGCTCTATGGAAAGATGTGGAGGTCGGAAAAGAGAAGAAGACCAGGTACCGGAGTTACCAGCGAGGAGCCCTGATTCTAGGGGTGGTCTTCTTGATGTTAACCCTGGGCATCTTCAGCCTCAGACACTTCTGGAGTCCAAGTCTGGGGAGGGTGTATGACCAACATTACAAGGCCATGCTGGACGGTATGGAGACAGACAGTATCATGGAGATTGACCCCGCCCACCGCATTGAGATCTTCAGGATGGGGAACGGCAGTGATGAGGTGCTCGAGGTCCACGACTTCAAACACGGAATCACGGGGATCTGGTTCGCCAAACACCAGCGGTGTTACATCAAGACCCAGACCACAGAGCTTCCCAAAGTGACAGAGGTGGTGACAGTGGACACAGAGCTACTGGTGGTTGAGACAGAGGGCATAGACATGCAGGTGATGGAGGACTCCCAGGTGTGGGTGCCTGCCGAGGAGCCCATCGCTAATCCATCCTTCCTCCTCAACTCCAAGATCTGGGAGATATGCCAGGAGCTGCCCATCCACTGGATCCATCCCTCCCCCATGAGAGATGCTGAGTTCCACgaggtggaggatgaggaggacatACCTGATGCTGAGGTCAGAGGTAACCGCGTCGCTCGTGACGTCCTGGACCAGGTTCCTGTCAACGACTACAGAGACATTGGAGTTGAGCTGGATAACCGTCTGGATGATCATGGCTACTGCTGCCAGCACTGTCGTCGTGGTTACCGCTACTGCCAGCGCTACTACGAGCCTCTGGGGGGGTTCAACCCCTACCCCTACTACTACCAAGGAGGACGTGTCATCTGTCAGATCATCATGCCCTGCAACTGGTGGATAGCCCGTATGCTTGGGAGGATCTGATTGGATAGTGGAACTGGATTCAACTATGTTTCAGCACAAATGACAGGTGCATTCATTTAAGGCTGTATTTACACTGCAGTAGGCTTAGTGTCTCAGCAACCGCAAAGAGACTTTAGTGCATGCCAGAATTTGTATTAACTCTAAGCAAGAGTAAGTGACATTTTGCTTTTGTGAACGCTTGGTAGAGTGTAAACCCAGCCTAGGCCCATTATCTTTGAAAATAATCAAATCTACTGTCAGTCTCTCAAAAGTCTAAATGGGAATTTTGGGAGCATCTTGGTGATTTCTCTAAAAGGCCTTGATGTGTCATCGGTGTGCTGAAGTGCAATTTTTCTTTCAACGTGTATTAAATCTTTTTTTAAGAATTTGTAACAGTAGCTAAAGAGCTAGTTTTGGCCGTTTCTCACGGTGCTGCATTTCTTTCTCATTTCATTTCCTTCTTAATCTTTTTTATGAGTGGCGTGTAACCGACTTTCTCTTGCTGTGTGGAGCAGACCTatgttcaaatagtatttgatttctttcaaatactttgagcttTTGCACAAGACAAACActgctaaagtatttgaaagaaaacaaatactatttgaacccacgTCTGCTATGGCCTATGACAACCAACAATGTATTTTATGTAGAACATACTGAAGTGCTGTAGCCTGCTCACTCTGTCAAGAGCATTTAACCCTTTCTAgactaaaaaaaaaatatgtcctATTTTTTGTGAATGATCTGTTTTGACTATTGTTTACTACAATTAGCATGTTTAacttaaaatatatatgtattgaTGAGGAGGTATATAAACAAAAAAACGATCAGAATGAGTCGACTAATTATAATAAAGCAGCGGCTATAGATATGCTTAATTCTTTTAATTCAACTTGCCAATCTTTATTTGATGTAAagtcattattgttattttaagcAGCATTGTTTTAACTGTAATGGCTGTAAATTACATAATTATGCCACAGCTCAATTACCATTATGTAATGTAATCTGCACATTTTTCTCCGTTGCTCAATAGCTCACAGTAATCATGCTCTGAACAGTGATTCTACTGGAATAGATAGGCCTACAACCACAAGAGATACTGTATGATGGCTTGACATGCTTAAGTTATTATCAATTACAtgcaattaaaatgtattttgatactAAAA

Function

NR:

description
tenomodulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561493.2 True 2190 mRNA 0.43 7 20476207 20564889

Neighbor

gene id symbol gene type direction distance location
LOC110488978 ube2a coding downstream 90146 20380904 ~ 20386061 (-)
sowahd LOC106604443 coding downstream 144835 20325473 ~ 20331673 (-)
ndufa1 LOC106611562 coding downstream 159593 20315512 ~ 20316866 (-)
zbtb33 LOC106604440 coding downstream 167764 20304374 ~ 20308443 (-)
LOC110488967 LOC106604437 coding downstream 202558 20265984 ~ 20273649 (-)
trnaa-ugc-63 NA coding upstream 142656 20707545 ~ 20707619 (-)
diaph2 LOC106604453 coding upstream 701238 21266127 ~ 21960003 (-)
LOC118938706 NA coding upstream 1117826 21682715 ~ 21684822 (-)
trnat-ugu-36 NA coding upstream 1248296 21813185 ~ 21813258 (-)
LOC110488986 LOC106604455 coding upstream 1663446 22228319 ~ 22233369 (-)
G1225615 NA non-coding downstream 84922 20390722 ~ 20391285 (-)
G1225589 NA non-coding downstream 172414 20300613 ~ 20303793 (-)
G1225584 LOC106604438 non-coding downstream 185208 20289822 ~ 20290999 (-)
G1225726 NA non-coding upstream 33576 20598465 ~ 20598774 (-)
G1225750 NA non-coding upstream 59637 20624526 ~ 20624775 (-)
G1225754 NA non-coding upstream 63601 20628490 ~ 20628741 (-)
G1225800 NA non-coding upstream 80632 20645521 ~ 20645807 (-)
G1225958 NA non-coding upstream 225627 20790516 ~ 20790737 (-)
G1225647 LOC106604448 other downstream 5684 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 150988 20321778 ~ 20325219 (-)
G1225499 NA other downstream 342154 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 639888 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 3076972 17395671 ~ 17399280 (-)
G1225875 NA other upstream 158148 20723037 ~ 20723236 (-)
G1229693 znf518b other upstream 3305069 23869958 ~ 23873564 (-)
LOC110489025 LOC106604425 other upstream 3991844 24556733 ~ 24561862 (-)
LOC110489477 LOC106604496 other upstream 4143072 24706395 ~ 24709307 (-)

Expression


Co-expression Network