LOC110489012 (znf518b)


Basic Information

Item Value
gene id LOC110489012
gene name znf518b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 23868568 ~ 23873598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561549.2
GTTTTGAGTGGTCATTTCGCCTGAAATTTTAGCTTGACCTGGCAACATTACCTGAAAGAATGTGCAGAAAAATACGGAGAAACGCAACATCGTAACTGCTGAAATTGTATTTGCTGTAAATGTTGTGATTATTTCAAGCATTTGAAATCCACTCGTTGGCGTATGGAAGTCAGCGCGTCCCAAATGTAGCAGACCATGACGGCACAAAGTCAAAATGTCAACAAAGGAAGGAAGAAGACATCCCAACCTGGAGAAGCAGGTCTGAGCAACCTATCAAATGGGAGTCCTGCAAATCAAAACACTCACAATTCATTTGTGCAGGATTCAAGAAGGCCAGATGAGTTTGACTTTGAGTGTGTGGTAAATTCCAAATTCAAAAACTCTAAAGTTTGGTTTTGTGAGAAATGTCGCTTTTTGACCACAGATTTTGATGAATACAGCAGCCATATTATGGAGCATGCGGTAATGAGATTTTACTGCTTCTATTGTAACCATGTCTCATACAGCGAGGCCGAATTAAACCACCATGTAGAACAGCACACCAGAGTACACCCCTTCAAGTGTCAGTTCTGTGATTATAGAGCTGTGAAGAAAGACTATGTTGAAATGCATATGAAGCGAATACACAATGCGCCTCCTGAGAAAGTATCCATTGCTTTGCCCAGAGCTCCCAAACCGGCCTCTCTCCCCAGTGCTCTGCCCAGAGATCCCACATTATCAGGGATCTTAAATACAAGGGTCGCACCTTTGCGCACTAAGAATATCACAACCAGAGTGGATGAAGGAAGACGAGTGGATGAAGGAAGACCTATGGATGGGACACTGGATGCAAACATATTGCCCAAAGTAGAGGTGGAGCTGTTGGCACCTTTAAATGAACCAATTCAACACAACAGGCCTTTGACTGTCTCTTTCCCTGAAGTGGGGACCATCCCCCCTGGCTGCCTTGTTGAACTTGTTGAGGTGAAAACAGTCAATGGCACCAAGGAACTAAAGTTGAGACTTGTCTCACAACAATCTAATGGGTCTGTAGCGAAAGCCTGTCGGACCACAACCTCACAAAATGCCACTTTGTGTAAATCATCGATGTCCAACGCCACTCCAACTAGAGAAAAGCCAGTGAAGAAGAGAACTTGCACAGCCAACATATCAACCCGACAAATAAATAACCAGAAACAAAAGGATTTAACAACTGCCCCCAACACAAATGGCATACAACTGAAAAAACACTCTGAAGAGTTGCTGGTGATGGTGAAAGATGTAAATCAGCCATTTGAGATAAAGAAAGAGGAAGTGAAGGAAGAGAACTGTGATTCTGGGCAAAAATCTGAACGCTTGACTTCATTTACAGCTGTCTCGAGTGTATCCATGATGGGAAATGTCAATGGCACCAAATCACCCTCTGTTGCACCTGCTGCAATGTCGTCTCTTGTATTGTGCAACCCTAGAAGTAGCACCCTGGTCATTCCCTCTCCAACAAACCAACCTAAAGAGGATGAGACTTGTCATGTGGCTGACTCAAATACCTCTGGTTGGACTCAATCTGAGAATCCATTAGTAGATGACATGCCAGGACCAAAAGGTTTCCCAGTCATTTCAGCTGTATTTTCTCTAAGTAGCCCTCAACTCTTGGCGGTGGCTCTTCGGACCATAGCTTTGGGTAACAATTCACCCTCTGCAACGGTAGAGCAAGGAAATGTCAAGAATTCTTTGATCCTCACACCTGCTAAGACAACAGCAGTGTGCAAAGGGCATGAACACAAGATAAAGCCAATAAACACTGATATGGCCCCTGAGGGTTTGTCCTCTGTTCATGCACCTCAAATGACCTCAAAAGCCTGTCACCAGATGCAGAGTGCTCAATGTTCTAGACACACCCAATCACTAACAAGTAATCCCTTGAGCACCAAGGGGGAAAATAACAGTGTTACAATAAAGCTTCTAAAGAAAACAGTTTTGAATATGAAAAAAAGTCCTCAAAAAAAAACAGTAAACACACGGGACAGTTGGATTGGCCAAATTAACACTGAAAAAGGGTCAGTCCCCAGACACTGGAAAAGTTCAGCAAACAAGCGTGACATTTCTGGTAGACTCTCTTCCTGCCTGAAGCTCTCATTGAAAAGGATACGAGTAGAAGAGGAAAGTAGCCTTCAACGTTGTGCACCTGAGTTGAACCAACGAAGGAAGAAAAGAAGACGACGAGACATGGTATCTGGGTCAAAGACTTTCACCCACCTGTTAGATACCACAGGTGACAGGGTTATTATCTGCCCAACTCCACTTAAAGAAGACCAGCTGGTGAAACAACCAGGCCCAAACCAACCTGTTGTGGTTCTCAATCATCCCAAGCCTCTGGTtctgagagggagggggggaatggAGACGATTCCAGACATTGGTCCAACATGTCACATAATGAAAATGAAGTTGAGCAAAGTAATGGGACATACGTATGAGGTGATTGGATGTACCGTTAAGGCCTCTCCTTAGGGTGATGACAAATTGTTATGGAAAATGATAGATTTATTTGCTGGGAACAGAACACTAAACATTGAGTTATCAAGACAAGAGCGATGCATTGCGCCATTAAGGGTTGGCTTGCACTCATTTCCAGGGTCCCTAGCTGAGCTTCAGATTAATAATGGTTAGACatttcatacaatatgttacttCATAGATTATGAAAGACTGAACCCCATTGAGAGAAACAAGTGGGCATTCAGGCAGGcgtatttaaaataaataaataataataaacaattaGCATTTTTGCTGCAGTATCATTGATAGCACAGATATGTGTAAATATGATTGTATATTTGAATGAACTTGTACTTTTTTTCTGATGGATGAACAACTGCTTAAATTAAATCAATGTCAATTATTTTGAATGCATTTTGAATAAAATAACATGTAACCTCCTGGTTACTTTTAGCCGGACTGCATTGAGAGACTAGAACACCAGCGAACGCAGTCAGCAACGTTACTAATTTGTTATTTTGAGTATTTAAATTGATAACTCACTCTTTAATTAAATAAATAGCTACACAAAAATAGTGTGTAGAATGATAGCCATGAGGACAGcaagggattttttttttcaactgtCATCGAAAGACCAGGCACATTTCTCTGCCATTGTCTCTGAAAAAAGCAATTGTAGCTAGAGCTGCCACCCAATACCAGTGTTTTTacatcaaaatataaatagttgTCAATCCTACTACAGAATTCTGAAAATGTTACCACATGGTGAATAGAATGTTCATGCTAAACCTCTTTCCATTGATCACTGACTTTTTGTATTGAAGCTCTGAAAAAAGTTTGGTTATATTATCCAACCTCATCATTCCTGTTTTATATTTAGCATTTATTAGGGTTGACTGACTTGACATTAACCTTTTAAGTTCCTAGTGGAGCAAAGTAACTCAGTGCTACTCTATTGAacctttttttttacttttacattTTTAACCATCATTCCAGGTGGTTCCTGCCATCTTTATCCCTTTTTATCCCATTCATGTTTTCTTTGGACTTTTTGTCATGGTTACTGCTGTATATTGCTAGAAGTGTTTGAACCGCTCCCTCAATCATCTGTTTTTCTGTAATTTTTTCTGTAAAAGTATCAGAGAAAATATTGAGATGTTTTAAATTGGACCATAACAATATATTTATCAAATATAGCTCTTGTTTAGATGTGGTGCGGATCTTTAAATGTACATGTATTTTGGTTTCCTTTGAAATTTCTCTCAACTTTTAAATGGGAGTTATTCTCATAATAACAATTATAGTTGTTCTCATGTTGTCAGTGTTTTCTGTCCTCTATGTATTATCTTAATGTGCCATTTTGAATAAAGATCTTTTTTCATACA
>XM_036943169.1
AATACATGCTGCTAGCAGGAAGGAAGAAGACATCCCAACCTGGAGAAGCAGGTCTGAGCAACCTATCAAATGGGAGTCCTGCAAATCAAAACACTCACAATTCATTTGTGCAGGATTCAAGAAGGCCAGATGAGTTTGACTTTGAGTGTGTGGTAAATTCCAAATTCAAAAACTCTAAAGTTTGGTTTTGTGAGAAATGTCGCTTTTTGACCACAGATTTTGATGAATACAGCAGCCATATTATGGAGCATGCGGTAATGAGATTTTACTGCTTCTATTGTAACCATGTCTCATACAGCGAGGCCGAATTAAACCACCATGTAGAACAGCACACCAGAGTACACCCCTTCAAGTGTCAGTTCTGTGATTATAGAGCTGTGAAGAAAGACTATGTTGAAATGCATATGAAGCGAATACACAATGCGCCTCCTGAGAAAGTATCCATTGCTTTGCCCAGAGCTCCCAAACCGGCCTCTCTCCCCAGTGCTCTGCCCAGAGATCCCACATTATCAGGGATCTTAAATACAAGGGTCGCACCTTTGCGCACTAAGAATATCACAACCAGAGTGGATGAAGGAAGACGAGTGGATGAAGGAAGACCTATGGATGGGACACTGGATGCAAACATATTGCCCAAAGTAGAGGTGGAGCTGTTGGCACCTTTAAATGAACCAATTCAACACAACAGGCCTTTGACTGTCTCTTTCCCTGAAGTGGGGACCATCCCCCCTGGCTGCCTTGTTGAACTTGTTGAGGTGAAAACAGTCAATGGCACCAAGGAACTAAAGTTGAGACTTGTCTCACAACAATCTAATGGGTCTGTAGCGAAAGCCTGTCGGACCACAACCTCACAAAATGCCACTTTGTGTAAATCATCGATGTCCAACGCCACTCCAACTAGAGAAAAGCCAGTGAAGAAGAGAACTTGCACAGCCAACATATCAACCCGACAAATAAATAACCAGAAACAAAAGGATTTAACAACTGCCCCCAACACAAATGGCATACAACTGAAAAAACACTCTGAAGAGTTGCTGGTGATGGTGAAAGATGTAAATCAGCCATTTGAGATAAAGAAAGAGGAAGTGAAGGAAGAGAACTGTGATTCTGGGCAAAAATCTGAACGCTTGACTTCATTTACAGCTGTCTCGAGTGTATCCATGATGGGAAATGTCAATGGCACCAAATCACCCTCTGTTGCACCTGCTGCAATGTCGTCTCTTGTATTGTGCAACCCTAGAAGTAGCACCCTGGTCATTCCCTCTCCAACAAACCAACCTAAAGAGGATGAGACTTGTCATGTGGCTGACTCAAATACCTCTGGTTGGACTCAATCTGAGAATCCATTAGTAGATGACATGCCAGGACCAAAAGGTTTCCCAGTCATTTCAGCTGTATTTTCTCTAAGTAGCCCTCAACTCTTGGCGGTGGCTCTTCGGACCATAGCTTTGGGTAACAATTCACCCTCTGCAACGGTAGAGCAAGGAAATGTCAAGAATTCTTTGATCCTCACACCTGCTAAGACAACAGCAGTGTGCAAAGGGCATGAACACAAGATAAAGCCAATAAACACTGATATGGCCCCTGAGGGTTTGTCCTCTGTTCATGCACCTCAAATGACCTCAAAAGCCTGTCACCAGATGCAGAGTGCTCAATGTTCTAGACACACCCAATCACTAACAAGTAATCCCTTGAGCACCAAGGGGGAAAATAACAGTGTTACAATAAAGCTTCTAAAGAAAACAGTTTTGAATATGAAAAAAAGTCCTCAAAAAAAAACAGTAAACACACGGGACAGTTGGATTGGCCAAATTAACACTGAAAAAGGGTCAGTCCCCAGACACTGGAAAAGTTCAGCAAACAAGCGTGACATTTCTGGTAGACTCTCTTCCTGCCTGAAGCTCTCATTGAAAAGGATACGAGTAGAAGAGGAAAGTAGCCTTCAACGTTGTGCACCTGAGTTGAACCAACGAAGGAAGAAAAGAAGACGACGAGACATGGTATCTGGGTCAAAGACTTTCACCCACCTGTTAGATACCACAGGTGACAGGGTTATTATCTGCCCAACTCCACTTAAAGAAGACCAGCTGGTGAAACAACCAGGCCCAAACCAACCTGTTGTGGTTCTCAATCATCCCAAGCCTCTGGTtctgagagggagggggggaatggAGACGATTCCAGACATTGGTCCAACATGTCACATAATGAAAATGAAGTTGAGCAAAGTAATGGGACATACGTATGAGGTGATTGGATGTACCGTTAAGGCCTCTCCTTAGGGTGATGACAAATTGTTATGGAAAATGATAGATTTATTTGCTGGGAACAGAACACTAAACATTGAGTTATCAAGACAAGAGCGATGCATTGCGCCATTAAGGGTTGGCTTGCACTCATTTCCAGGGTCCCTAGCTGAGCTTCAGATTAATAATGGTTAGACatttcatacaatatgttacttCATAGATTATGAAAGACTGAACCCCATTGAGAGAAACAAGTGGGCATTCAGGCAGGcgtatttaaaataaataaataataataaacaattaGCATTTTTGCTGCAGTATCATTGATAGCACAGATATGTGTAAATATGATTGTATATTTGAATGAACTTGTACTTTTTTTCTGATGGATGAACAACTGCTTAAATTAAATCAATGTCAATTATTTTGAATGCATTTTGAATAAAATAACATGTAACCTCCTGGTTACTTTTAGCCGGACTGCATTGAGAGACTAGAACACCAGCGAACGCAGTCAGCAACGTTACTAATTTGTTATTTTGAGTATTTAAATTGATAACTCACTCTTTAATTAAATAAATAGCTACACAAAAATAGTGTGTAGAATGATAGCCATGAGGACAGcaagggattttttttttcaactgtCATCGAAAGACCAGGCACATTTCTCTGCCATTGTCTCTGAAAAAAGCAATTGTAGCTAGAGCTGCCACCCAATACCAGTGTTTTTacatcaaaatataaatagttgTCAATCCTACTACAGAATTCTGAAAATGTTACCACATGGTGAATAGAATGTTCATGCTAAACCTCTTTCCATTGATCACTGACTTTTTGTATTGAAGCTCTGAAAAAAGTTTGGTTATATTATCCAACCTCATCATTCCTGTTTTATATTTAGCATTTATTAGGGTTGACTGACTTGACATTAACCTTTTAAGTTCCTAGTGGAGCAAAGTAACTCAGTGCTACTCTATTGAacctttttttttacttttacattTTTAACCATCATTCCAGGTGGTTCCTGCCATCTTTATCCCTTTTTATCCCATTCATGTTTTCTTTGGACTTTTTGTCATGGTTACTGCTGTATATTGCTAGAAGTGTTTGAACCGCTCCCTCAATCATCTGTTTTTCTGTAATTTTTTCTGTAAAAGTATCAGAGAAAATATTGAGATGTTTTAAATTGGACCATAACAATATATTTATCAAATATAGCTCTTGTTTAGATGTGGTGCGGATCTTTAAATGTACATGTATTTTGGTTTCCTTTGAAATTTCTCTCAACTTTTAAATGGGAGTTATTCTCATAATAACAATTATAGTTGTTCTCATGTTGTCAGTGTTTTCTGTCCTCTATGTATTATCTTAATGTGCCATTTTGAATAAAGATCTTTTTTCATACA

Function

symbol description
znf518b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
uncharacterized protein LOC110489012

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561549.2 False 3875 mRNA 0.40 2 23868568 23873598
XM_036943169.1 True 3667 mRNA 0.40 2 23869734 23873598
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Neighbor

gene id symbol gene type direction distance location
grxcr1a grxcr1 coding upstream 38334 23825374 ~ 23830234 (+)
shisa3 shisa3 coding upstream 245705 23616713 ~ 23622863 (+)
LOC118938707 NA coding upstream 294591 23572973 ~ 23573977 (+)
ky ky coding upstream 546911 23314948 ~ 23321657 (+)
LOC110487749 LOC106604462 coding upstream 612199 22901758 ~ 23256369 (+)
LOC110489017 fa55c coding downstream 526885 24400483 ~ 24439204 (+)
LOC110489020 LOC106609103 coding downstream 577834 24448300 ~ 24458335 (+)
csn6 cops6 coding downstream 593089 24466687 ~ 24474857 (+)
gpc2 gpc2 coding downstream 665568 24539166 ~ 24551802 (+)
LOC110489028 LOC106604497 coding downstream 728474 24602072 ~ 24608023 (+)
G1229061 NA non-coding upstream 29463 23836490 ~ 23839105 (+)
G1228903 bend4 non-coding upstream 255121 23612872 ~ 23613447 (+)
G1228900 bend4 non-coding upstream 259226 23608757 ~ 23609342 (+)
G1228899 NA non-coding upstream 259891 23608275 ~ 23608677 (+)
G1229788 NA non-coding downstream 140247 24013845 ~ 24014082 (+)
G1229823 NA non-coding downstream 158012 24031610 ~ 24031882 (+)
G1229883 NA non-coding downstream 200992 24074590 ~ 24075012 (+)
G1229884 NA non-coding downstream 201866 24075464 ~ 24076005 (+)
G1229894 NA non-coding downstream 218427 24092025 ~ 24092345 (+)
G1228466 LOC100136012 other upstream 1014907 22853315 ~ 22853661 (+)
G1225840 NA other upstream 3172431 20695672 ~ 20696137 (+)
LOC110488973 nkap other upstream 3554458 20308619 ~ 20314136 (+)
G1225174 NA other upstream 3856091 20012015 ~ 20012477 (+)
G1231863 NA other downstream 2073114 25946712 ~ 25952747 (+)
G1231862 LOC106604502 other downstream 2088859 25962457 ~ 25966312 (+)
G1232217 NA other downstream 2281958 26155556 ~ 26156812 (+)
ube2d2 UBE2D2 other downstream 2826632 26699956 ~ 26711938 (+)

Expression

LOC110489012(znf518b) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110489012(znf518b) Expression in each Bioproject

Bar chart with 21 bars.
LOC110489012(znf518b) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network