LOC110489013 (clnk)


Basic Information

Item Value
gene id LOC110489013
gene name clnk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 23893850 ~ 23929558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561553.2
GTAATCGTTTTAGAGGAAATGAGACTATACCATCGCAAAGGAAACCACAGGAAAGAGGCTGACCTTGTGCACCTGTACTGCTGCTGCAGAGCTTTCGGGTTAcactgcagacagacacagagacattgtGGTGTCCTAAAACTGTTCTCATCAAAAACAGGGCCATAAAGTTCTAAAGTATCCATACTGAGGCCTGGATTGTACTGTGGGTGGACAATGGTGCAATATTTTGAGTTCTACTTATAAGGAACCTTGGAAGAGAGGCAACATGACCAAACAGAGATATGGTCGCTATAGCAACATGGAGGAGGATGAGTATCATGTCCCTGATAACCATGAAGAAGAGTTCTTGGTGCACATCCTTCCTGCCAGAGCCTCCGAGTCAGACAGAGACTATGCAGATAGGGACATTTCCAGATCCTCCTACGCTCAGAGTATCAGCTCCACTTCAAGTGGCAGCCCTATCATACCCCCACGGCATCCCAAAAGAGGCCTCCCTTGTACTTCTCCAGGAAATACCGGACCTTCTGTCAACCGCCAACTGAAGCCCAGAAAACCAAGGAGGACCCAGTTAGatggcagagCACAAGTCATGGAAACTACAGAACAGAACATGCTACTCCCACCAAGGTCCCCACCATCCTTACCTAAGGACCTAATGAACAAGCTGTCTGGGCTGAACCTCCAGAGGCCCTGCAGGAGAGAcagacagagaagacaacaaAATGTGGAATGCAATACACCTTCAAATAGTAATTGTTTAAGGAAAGAGCAAACTATCCAAAGGTATTCACTGGACCTTGAATCTCAACTCAACACAGACATAAGGTTACAACAAAGGCACAATACCCCAGAAGAGTCGTCAGTGAAGCGCCAACAACACCATGAGTGGCCTCAAACCAAAGATGACGTGGAGCAGCATGACTTTGTCCCCAAGGAAAGACCGTGTCAGACATACAATGAACAAGACTGGTACATAGGAGCTTGTGATCGAGCAGAGGCTGAACATGCCTTACACCTGGTGAATAAGAATGGGGCATTTTTGGTGCGGAATTGCTCAAGGAACACGAAGAGCGAACCCTTTGTCTTAGCAGTGTTTCATGACAAGAGAGTTTTCAACGTTAAAATTCGGTTCATTGATAGCACCTCCAAGTATGTCCTTGGGACTGGGCAAAGTGCCAATGATATGTTTGATTCTGTGGCAGACATCGTCAGATTTCACTCCATATTCCCTGTGGTCCTGATCAATGGGAGGAACCAATTAGCTAACAGATATCAGGGGAACTGTGTGTTGACATACCCAATCACAAAAGAGGTTGTCAACCAACTGTTGGAATGAAAGGCCCTCTGTGCCCAAGCAATAACTATCCCATTTTGTCTGAGTTGATCCACTGGATCTGTCTGTGTTTATCTGTTTTGTAATGTGCTATATTTTACTATAAATTGTTACATTTCGCTCTCTACTCTGTACAAAGACTCACCATTGTCTTGCATCTGAGtacatgtactgtatagacaTTATGTAAACTTGCCTAAATAAAGGTTTTAA
>XM_021561550.2
AGGCCAGATGGTAATCGTTTTAGAGGAAATGAGACTATACCATCGCAAAGGAAACCACAGGAAAGAGGCTGACCTTGTGCACCTGTACTGCTGCTGCAGAGCTTTCGGGTTAcactgcagacagacacagagacattgtGGTGTCCTAAAACTGTTCTCATCAAAAACAGGGCCATAAAGTTCTAAAGTATCCATACTGAGGCCTGGATTGTACTGTGGGTGGACAATGGTGCAATATTTTGAGTTCTACTTATAAGGAACCTTGGAAGAGAGGCAACATGACCAAACAGAGATATGGTCGCTATAGCAACATGGAGGAGGATGAGTATCATGTCCCTGATAACCATGAAGAAGAGTTCTTGGTGCACATCCTTCCTGCCAGAGCCTCCGAGTCAGACAGAGACTATGCAGATAGGGACATTTCCAGATCCTCCTACGCTCAGAGTATCAGCTCCACTTCAAGTGGCAGCCCTATCATACCCCCACGGCATCCCAAAAGAGGCCTCCCTTGTACTTCTCCAGGAAATACCGGACCTTCTGTCAACCGCCAACTGAAGCCCAGAAAACCAAGGAGGACCCAGTTAGatggcagagCACAAGTCATGGAAACTACAGAACAGAACATGCTACTCCCACCAAGGTCCCCACCATCCTTACCTAAGGACCTAATGAACAAGCTGTCTGGGCTGAACCTCCAGAGGCCCTGCAGGAGAGAcagacagagaagacaacaaAATGTGGAATGCAATACACCTTCAAATAGTAATTGTTTAAGGAAAGAGCAAACTATCCAAAGGTATTCACTGGACCTTGAATCTCAACTCAACACAGACATAAGGTTACAACAAAGGCACAATACCCCAGAAGAGTCGTCAGTGAAGCGCCAACAACACCATGAGTGGCCTCAAACCAAAGATGACGTGGAGCAGCATGACTTTGTCCCCAAGGAAAGACCGTGTCAGACATACAATGAACAAGACTGGTACATAGGAGCTTGTGATCGAGCAGAGGCTGAACATGCCTTACACCTGGTGAATAAGAATGGGGCATTTTTGGTGCGGAATTGCTCAAGGAACACGAAGAGCGAACCCTTTGTCTTAGCAGTGTTTCATGACAAGAGAGTTTTCAACGTTAAAATTCGGTTCATTGATAGCACCTCCAAGTATGTCCTTGGGACTGGGCAAAGTGCCAATGATGTGAGTAGACAAATGTTTGATTCTGTGGCAGACATCGTCAGATTTCACTCCATATTCCCTGTGGTCCTGATCAATGGGAGGAACCAATTAGCTAACAGATATCAGGGGAACTGTGTGTTGACATACCCAATCACAAAAGAGGTTGTCAACCAACTGTTGGAATGAAAGGCCCTCTGTGCCCAAGCAATAACTATCCCATTTTGTCTGAGTTGATCCACTGGATCTGTCTGTGTTTATCTGTTTTGTAATGTGCTATATTTTACTATAAATTGTTACATTTCGCTCTCTACTCTGTACAAAGACTCACCATTGTCTTGCATCTGAGtacatgtactgtatagacaTTATGTAAACTTGCCTAAATAAAGGTTTTAA
>XM_021561552.2
GAGGCCAGATGGTAATCGTTTTAGAGGAAATGAGACTATACCATCGCAAAGGAAACCACAGGAAAGAGGCTGACCTTGTGCACCTGTACTGCTGCTGCAGAGCTTTCGGGTTAcactgcagacagacacagagacattgtGGTGTCCTAAAACTGTTCTCATCAAAAACAGGGCCATAAAGTTCTAAAGTATCCATACTGAGGCCTGGATTGTACTGTGGGTGGACAATGGTGCAATATTTTGAGTTCTACTTATAAGGAACCTTGGAAGAGAGGCAACATGACCAAACAGAGATATGGTCGCTATAGCAACATGGAGGAGGATGAGTATCATGTCCCTGATAACCATGAAGAAGAGTTCTTGGTGCACATCCTTCCTGCCAGAGCCTCCGAGTCAGACAGAGACTATGCAGATAGGGACATTTCCAGATCCTCCTACGCTCAGAGTATCAGCTCCACTTCAAGTGGCAGCCCTATCATACCCCCACGGCATCCCAAAAGAGGCCTCCCTTGTACTTCTCCAGGAAATACCGGACCTTCTGTCAACCGCCAACTGAAGCCCAGAAAACCAAGGAGGACCCAGTTAGatggcagagCACAAGTCATGGAAACTACAGAACAGAACATGCTACTCCCACCAAGGTCCCCACCATCCTTACCTAAGGACCTAATGAACAAGCTGTCTGGGCTGAACCTCCAGAGGCCCTGCAGGAGAGAacagagaagacaacaaAATGTGGAATGCAATACACCTTCAAATAGTAATTGTTTAAGGAAAGAGCAAACTATCCAAAGGTATTCACTGGACCTTGAATCTCAACTCAACACAGACATAAGGTTACAACAAAGGCACAATACCCCAGAAGAGTCGTCAGTGAAGCGCCAACAACACCATGAGTGGCCTCAAACCAAAGATGACGTGGAGCAGCATGACTTTGTCCCCAAGGAAAGACCGTGTCAGACATACAATGAACAAGACTGGTACATAGGAGCTTGTGATCGAGCAGAGGCTGAACATGCCTTACACCTGGTGAATAAGAATGGGGCATTTTTGGTGCGGAATTGCTCAAGGAACACGAAGAGCGAACCCTTTGTCTTAGCAGTGTTTCATGACAAGAGAGTTTTCAACGTTAAAATTCGGTTCATTGATAGCACCTCCAAGTATGTCCTTGGGACTGGGCAAAGTGCCAATGATGTGAGTAGACAAATGTTTGATTCTGTGGCAGACATCGTCAGATTTCACTCCATATTCCCTGTGGTCCTGATCAATGGGAGGAACCAATTAGCTAACAGATATCAGGGGAACTGTGTGTTGACATACCCAATCACAAAAGAGGTTGTCAACCAACTGTTGGAATGAAAGGCCCTCTGTGCCCAAGCAATAACTATCCCATTTTGTCTGAGTTGATCCACTGGATCTGTCTGTGTTTATCTGTTTTGTAATGTGCTATATTTTACTATAAATTGTTACATTTCGCTCTCTACTCTGTACAAAGACTCACCATTGTCTTGCATCTGAGtacatgtactgtatagacaTTATGTAAACTTGCCTAAATAAAGGTTTTAA
>XM_021561551.2
GCTGTCTACAATTTATCAAAAGTTGCCTTTTACTTTTATTGCAGTGTTATTTCAGTATAGCTTATTGTATAATACCAATACCTATAATTTTATTGAATTAGATTTACAGTATACAGTTGTAATACATTAAAGATGCTTTTTACAACCCACCTCTACAATGGAAGTTGGCTAGGGTCAACAGCAGCACTCTGGTTGAGAACTAccactgtgttagtgtgttagcaGGAGTCTATAAACTTCCCTTTTAGAAGTTGGAAATTGAGTTAATCTTGCTCAACTGCAACTCTCTGCTGTCATATTGATTTATTTGTTTTTGCACCTCTAAAGGAAACTTCGAGAAGAACACCTGGTTACAGTATGTCTGCAATCAATCTGATGAACCTTGGAAGAGAGGCAACATGACCAAACAGAGATATGGTCGCTATAGCAACATGGAGGAGGATGAGTATCATGTCCCTGATAACCATGAAGAAGAGTTCTTGGTGCACATCCTTCCTGCCAGAGCCTCCGAGTCAGACAGAGACTATGCAGATAGGGACATTTCCAGATCCTCCTACGCTCAGAGTATCAGCTCCACTTCAAGTGGCAGCCCTATCATACCCCCACGGCATCCCAAAAGAGGCCTCCCTTGTACTTCTCCAGGAAATACCGGACCTTCTGTCAACCGCCAACTGAAGCCCAGAAAACCAAGGAGGACCCAGTTAGatggcagagCACAAGTCATGGAAACTACAGAACAGAACATGCTACTCCCACCAAGGTCCCCACCATCCTTACCTAAGGACCTAATGAACAAGCTGTCTGGGCTGAACCTCCAGAGGCCCTGCAGGAGAGAcagacagagaagacaacaaAATGTGGAATGCAATACACCTTCAAATAGTAATTGTTTAAGGAAAGAGCAAACTATCCAAAGGTATTCACTGGACCTTGAATCTCAACTCAACACAGACATAAGGTTACAACAAAGGCACAATACCCCAGAAGAGTCGTCAGTGAAGCGCCAACAACACCATGAGTGGCCTCAAACCAAAGATGACGTGGAGCAGCATGACTTTGTCCCCAAGGAAAGACCGTGTCAGACATACAATGAACAAGACTGGTACATAGGAGCTTGTGATCGAGCAGAGGCTGAACATGCCTTACACCTGGTGAATAAGAATGGGGCATTTTTGGTGCGGAATTGCTCAAGGAACACGAAGAGCGAACCCTTTGTCTTAGCAGTGTTTCATGACAAGAGAGTTTTCAACGTTAAAATTCGGTTCATTGATAGCACCTCCAAGTATGTCCTTGGGACTGGGCAAAGTGCCAATGATGTGAGTAGACAAATGTTTGATTCTGTGGCAGACATCGTCAGATTTCACTCCATATTCCCTGTGGTCCTGATCAATGGGAGGAACCAATTAGCTAACAGATATCAGGGGAACTGTGTGTTGACATACCCAATCACAAAAGAGGTTGTCAACCAACTGTTGGAATGAAAGGCCCTCTGTGCCCAAGCAATAACTATCCCATTTTGTCTGAGTTGATCCACTGGATCTGTCTGTGTTTATCTGTTTTGTAATGTGCTATATTTTACTATAAATTGTTACATTTCGCTCTCTACTCTGTACAAAGACTCACCATTGTCTTGCATCTGAGtacatgtactgtatagacaTTATGTAAACTTGCCTAAATAAAGGTTTTAA

Function

symbol description
clnk Predicted to be involved in intracellular signal transduction and transmembrane receptor protein tyrosine kinase signaling pathway. Located in cytoplasm.

NR:

description
B-cell linker protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561553.2 False 1549 mRNA 0.45 16 23893850 23907988
XM_021561550.2 False 1571 mRNA 0.45 16 23893850 23907998
XM_021561552.2 False 1569 mRNA 0.45 16 23893850 23907999
XM_021561551.2 True 1691 mRNA 0.43 16 23893850 23929558

Neighbor

gene id symbol gene type direction distance location
gsr gsr coding downstream 27405 23856756 ~ 23866445 (-)
slc30a9 slc30a9 coding downstream 38340 23836456 ~ 23855510 (-)
LOC110489007 atp8a1 coding downstream 76703 23627296 ~ 23817147 (-)
trnaa-ugc-64 NA coding downstream 201188 23692594 ~ 23692662 (-)
LOC110487750 bend4 coding downstream 279563 23597045 ~ 23614287 (-)
LOC110487751 NA coding upstream 6133 23935691 ~ 23936972 (-)
hs3st1 hs3st1 coding upstream 26332 23955890 ~ 23958865 (-)
LOC110487753 rab28 coding upstream 297261 24226819 ~ 24323671 (-)
nkx3-2 nkx3-2 coding upstream 403630 24333188 ~ 24335273 (-)
bod1l1 LOC106604486 coding upstream 414782 24344340 ~ 24368050 (-)
G1229653 NA non-coding downstream 102826 23787904 ~ 23791024 (-)
G1229537 NA non-coding downstream 299246 23594397 ~ 23594604 (-)
G1229529 NA non-coding downstream 310922 23582137 ~ 23582928 (-)
LOC110489005 LOC106604473 non-coding downstream 323040 23562444 ~ 23581796 (-)
G1229786 NA non-coding upstream 82595 24012153 ~ 24012394 (-)
G1229812 NA non-coding upstream 96038 24025596 ~ 24025873 (-)
G1229846 NA non-coding upstream 114581 24044139 ~ 24044475 (-)
G1229862 NA non-coding upstream 125571 24055129 ~ 24055512 (-)
G1229864 NA non-coding upstream 126239 24055797 ~ 24056500 (-)
G1229693 znf518b other downstream 20286 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 1660559 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3170614 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 3423327 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 3568631 20321778 ~ 20325219 (-)
LOC110489025 LOC106604425 other upstream 627175 24556733 ~ 24561862 (-)
LOC110489477 LOC106604496 other upstream 778403 24706395 ~ 24709307 (-)
G1232240 NA other upstream 2173788 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 3051152 26979968 ~ 26990318 (-)
G1233612 NA other upstream 3063235 26992793 ~ 26993184 (-)

Expression


Co-expression Network