LOC110489025 (LOC106604425)


Basic Information

Item Value
gene id LOC110489025
gene name LOC106604425
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24556733 ~ 24561862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561573.2
AAAGTTCATGAAAGTGTATATATAAGTCGAGATTCAGGTTAGAGTTACTCACTTCACAGTGGAGACACTCAAACAGATATCTGAGGGCAAAAAACACCTTATCAGTCACACTGAAGGCCATTGAACCCAGTTGCCAGAGTTGATGCCATGGGGTTCCAGAGGGCTTTCCTGTTCCTGGTGTTGATGTGTGCCACAGTGATGGTACACAGTCAACCGGCCGACATCAGCCGTCGTTATACACACTTCCTCCGACAGCACGTCAAGGGGGATATGACGATACAGAAGTGTCAGGGTGTGATGGGCTACTTGGAGTTGACTGAGCCTGATAGCGCAAATTGCAAAGTAAAAAACACATTCATTAAAGCCAATTCAAATCAGGTCAGGGCCATTTGTACTGGGGGTGGCACACCTATGGGCAACAGTCTGTTTGAAAGCAATAATCGCTTCCCTGTAGTCATATGTAAGCACAAGTGTAAAAAGAAAACGCTATGTCAACACACTCATCCCCGATGTGAATATGAGGGTTCTTTGTCCACCAGGAAAGTTGTCATTGCTTGTGATCGAGAATGGCCAGTGCACTATGGCGACGATATACTTATTGTCTAATTTAGCAGATTGCTATGAACTGGTtctctgaaataaataataatttgccTAATTTGACACCTGAA
>TU1404303
TATTCAAACCATACAAAACCAGACACACATGCTGCTCCCAACCTATCATGAGTCCCAGGAACAATCTTTCCATGGGAGATCTCAGGGGAAACTTTGTACAAAGCCTGGTCCAGCGGTTCTCAAATATCTCTGGTTAATATTTCTGGATTCAAACCAAGACACATGAAAtgcatttgtttattttttatttcacctttatttaaccaggtagtccagttgagaacatgttctcatttacaagtgtgacctggccaagataaagcaaagcagtgtgacaaaaacaacaacacagagttacacatgtaataaacaaacatacaggcaataacacaatagaaaagtctatatacagtgtgtgcaaagcaGGTAAGAAGAGgaaagtaaggcaataaataggccataaaggcgaaataaatacaatttagcaattaaacactcgagtgatagatgtgcagaagaagaatgtgcaagtagagatactggggtacaaaggagaagaaaaaaataacagtatggggatgaggtagttggatgggcaatttacagatgggctatgtacaggtgaagtgatctgtgaactgctctgatagctggtgcctaaagttagagagggaaatACGAGTCTTCAGCTTCAgctattcgttccagtcattggcagcagagaactggaaggagaggcggccaaaggaggaattggctttgggggtgactagtgaaatatacctgctggagcgcgtgctatgtgtgggtgctgctatggtgaccagtgagctgagataaggtgggcctttacctagcaaagacttatatatatcctggagccagtgggtgtggtgacgaatatgaagcgagggccagccaacgagagcatacaggttgcagtggtgagTAGTACATgagactttggtgacaaaatagatggcactgtgatagactgcatccaatttgctgagtagagtgttggaggttattttgtaaatgacatcggatagtcagttttacgagggtatgtttggcagcatgagtgaaggatactttgttgtgaaataggaagccgattctagatttaattttggattggtgatgcttaatgtgagtctggaaggagagtttacaatctaaccagacacctaggtatttgtagttgtccacatattcaagaaccgtccagagtagtgatgctggaggagtgggcaggtgtgggcagtgatcgtttgaagagcatgcttttagttttacttgcatttaagagcagttgggggccacggaaggagagttatatggcattgaagctcgtctggaggtttgttaacacagtgtccaaagaagggctagaggtatacagaatggtgtcgtctgcgtagaggtggatcagagaatcaccagcagcaagagagacatcattgatgtgtacagagaaaagagacggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggccctccgatttgtcacactgaactctgtctgagaagtagttggtgaaccaggcgaggccgtcatttgagaaaccaaggttgttgagcctgctgataagaatgtggtgattgacagagtcgaaagccttggccaagtcgatgaatatggctgtgGGATATTGTGGGATATTGAATGCACATTGATTCTAATAGAACTGTTAACAGGCATTACCCAGAGATTGTGGTGAATAACTCCCTgctatcaaccaatcagcatccaggatccaaacaacccGTTATATAATAAGAATCCAAAGTCCAACAATTTATGTAGCAATCCTGGACTTCCCAACAGCTGTTGGCATTAACTAGTGTTTATCTCCAGGTTTATTTGGTTTTCCTGTTCTCTGTGTAAGGCAAAGTAGAAGCAAAGAGCAGGCAATGATTATGGATTGCTTATGAAGAGAATACTTGTATTCAATCAACTATGGATATCAGTATTTCTGAACAGCACTTTCATAACTGAGTTTGATTGGTACAGCAGCTTGTCTTTAATAGAGGGAGTCGATATTTGATTTAGAAGTCTTACATCAGGTGGTGTGTTGGCCTTCACAGCTGAATGGATCACGAGTCACACCACAGAACTGTCACTTTATAAATGAACAGTCAACTCTCTCCATCCAACACAGTGCTGTCTGGATTgcccagtggtgattttagcatgtaaatcttatATGTGGGTTGcgtgccagcaaagccacaacacaacactaaacaatacattaattccACTAtaacaaactgttagggcctacataaagctgtgcCAACatcagagtcccaacagcagtcccaactgGGATTTTTGGAGATTCTTCAAGGcagaactgctccagctccttcaagttcgATGGGTTCCGcttgtgtacagcaatctttatgtcataccacagattctcaattggattgaggtctgggctttgactaggccattccaaggcatttaaatgtttccccttaaaccactcgagtgttgctttagcagtatgtttagggtcattgtcctgctgggaagtgaacctccgtcccaggctcaaatctctggaagattgaaacaggtttccctcaagaatttccctgcatTTAGcgccatcattccttcaattctgaccagtttcccagtccctgccgatgaaaaacatccccacagcaagatgctgccacacccatgcttcactgtggggaagggattctcggggtgatgagaggtgttgggtttacgccagacatagcgttttccttgatggccaaaaagctcaattttagtctcatctgaccagagtaccttcttccatatgtttggggagtccacatgccttttggcgaatgccatatcagctatgtttttttaaaggcagtaaatgaggctgaatgaactgttttgctgccagacaaggctccgctgatagccaggtgtagcagtggtatagtgcaattaatgtattgtttagtgtagtCTTGTGTAGTGACTTTACTGGCTTGCATCCCTGTATTTGGCCGTTAAATGAACCTGAAATCAATGTTTTATTCAGATTAATTTATTGTTTATATATTTGATAGCAATGGGATGCAATTCCATCATCTCAGTCACATACATTGGGTTCTGTAACTATTTGCATAACATTAATATAACTTGGCCTAGGACTGCTAAGGTTGGCATCACACATGATGTGAGATATATCTTGATTGATTGGGCCATTTACTTTACATTACTTTATTAAATGAAGCTTTAAAAGCACTGTACACATTAATCAACATTACTGTAAACATGTTAgttttagccagccagctaattcTCAACTGTAGTTCCTGGGCAGATTATTAACATTAATTAAAATGACAATACAGACAGACAATGAGCACATGCAGAGCAGCACAGAATACAACAGGACAAGGAAACATATGACAACCAACCCttagcaggcagacagacaaaaagCAACCAAACAATACAAGAGAAACATAACAAGGTATACAAAGCTCTCAAgccatttggaaaaaagttcagtTAATAGTTAGCTAATTTAAACCCCTTTCTCCCTTACAATGTTGCAACACGGGTGCAGGGGCTCCCAAATCAAAGTTCATGAAAGTGTATATATAAGTCGAGATTCAGGTTAGAGTTACTCACTTCACAGTGGAGACACTCAAACAGATATCTGAGGGCAAAAAACACCTTATCAGTCACACTGAAGGCCATTGAACCCAGTTGCCAGAGTTGATGCCATGGGGTTCCAGAGGGCTTTCCTGTTCCTGGTGTTGATGTGTGCCACAGTGATGGTACACAGTCAACCGGCCGACATCAGCCGTCGTTATACACACTTCCTCCGACAGCACGTCAAGGGGGATATGACGATACAGAAGTGTCAGGGTGTGATGGGCTACTTGGAGTTGACTGAGCCTGATAGCGCAAATTGCAAAGTAAAAAACACATTCATTAAAGCCAATTCAAATCAGGTCAGGGCCATTTGTACTGGGGGTGGCACACCTATGGGCAACAGTCTGTTTGAAAGCAATAATCGCTTCCCTGTAGTCATATGTAAGCACAAGTGTAAAAAGAAAACGCTATGTCAACACACTCATCCCCGATGTGAATATGAGGGTTCTTTGTCCACCAGGAAAGTTGTCATTGCTTGTGATCGAGAATGGCCAGTGCACTATGGCGACGATATACTTATTGTCTAATTTAGCAGATTGCTATGAACTGGTtctctgaaataaataataatttgccTAATTTGACACCTGAATTACTGTATCCTGTTTTGTTTTTCACTATGATGACAACACATTACTGGGGATTTTGGACCAATCTTCCTAGTTGTATAAATTGATTAGTGTCCATTGATCTGGAAACAATGAATTATCTGAAAGAATGACCAAAATACGTCTCAGGGTTTGATTACATTTCAGTCAGTTTTAGTCTTTGAAGGGGGCATACATGATTGTTGGATATTTATGTCAAGGCTTGCTTAATTTATAGGCCATAGTCCCATATTACAGTAATGCTTAACTAGACAGTAAACAAATGAAGCTAATTTCCAAACAAAAGAACAGAAGTGTAACCATAACCTTTGAACTCTCTTGTTTTCTACCACGAACT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0050829 defense response to Gram-negative bacterium biological_process
GO:0050830 defense response to Gram-positive bacterium biological_process
GO:0004540 ribonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561573.2 False 671 mRNA 0.44 3 24557086 24558257
TU1404303 True 4629 TUCP 0.42 3 24556733 24561862

Neighbor

gene id symbol gene type direction distance location
LOC110487755 LOC106604493 coding downstream 19758 24497380 ~ 24537328 (-)
mcm7 mcm7 coding downstream 61524 24481675 ~ 24495562 (-)
LOC110489021 LOC106604492 coding downstream 77889 24476608 ~ 24479197 (-)
LOC110489019 LOC106604490 coding downstream 91113 24462595 ~ 24465973 (-)
bod1l1 LOC106604486 coding downstream 189036 24344340 ~ 24368050 (-)
LOC110489023 LOC106604495 coding upstream 5132 24563389 ~ 24580537 (-)
LOC110489029 NA coding upstream 41442 24599526 ~ 24682015 (-)
LOC110489477 LOC106604496 coding upstream 148138 24706395 ~ 24709307 (-)
LOC118938708 LOC106604508 coding upstream 304687 24862944 ~ 24864488 (-)
LOC110489031 NA coding upstream 313684 24871941 ~ 24873666 (-)
G1230592 NA non-coding downstream 8247 24548405 ~ 24548839 (-)
G1230591 NA non-coding downstream 10360 24546459 ~ 24546726 (-)
G1230590 NA non-coding downstream 12286 24544374 ~ 24544800 (-)
G1230587 NA non-coding downstream 17385 24539099 ~ 24539701 (-)
G1230576 NA non-coding downstream 23743 24533121 ~ 24533343 (-)
G1230584 NA non-coding upstream 3608 24561865 ~ 24603948 (-)
G1230607 NA non-coding upstream 45297 24603554 ~ 24614496 (-)
G1230609 NA non-coding upstream 47881 24606138 ~ 24715472 (-)
G1230580 NA non-coding upstream 113086 24671343 ~ 24671947 (-)
G1229693 znf518b other downstream 683522 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 2323795 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3833850 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 4086563 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 4231867 20321778 ~ 20325219 (-)
G1232240 NA other upstream 1545089 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 2422453 26979968 ~ 26990318 (-)
G1233612 NA other upstream 2434536 26992793 ~ 26993184 (-)
si:dkeyp-115e12.6 LOC106604388 other upstream 2442459 26995966 ~ 27001492 (-)

Expression


Co-expression Network