LOC110489029


Basic Information

Item Value
gene id LOC110489029
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24599526 ~ 24682015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468511.2
accacagaagaagctaTTGGGTTAGCTAGAACAGAGAGTTGTACCAACAATACCTACATGACAATTCAATGGTGGGGCCTTTTACTGGAACAGTGGTTTATTTTGGCCTGCCTACCATTTCACATATCAAAATGGTGATCCAGGAAGCATATTTGGATTCTTCCTGGCACTGCACCAACAACTGAATCCTGTCAATAAGAAACTATAGAAACCCAAGCATGAAAATGGAGACGGAATGTACAGTAAAACATTCAACGCTGAATCAGAAAATGAGCAAGAATAAAAATGaccatcacacacacagccactgctGCTCCCAAGCTGAGGACAATGGGATCCACTGTGCTTCCTGGGATGAAAATACATTTAACATGTTtgtttgatgttttatgttaagcTTGCATAGTTGATAACACAATTTATTTCGATTTGACCCATTTAAACTAAATAATGGTACCTATAAAATATGCTTAAATGTTTCGATAAAGAAGTGTAAGGTGCTTTATCAATTTAATAAAAAGTTGTACCTTTAATGATGTTAAGTTTTGT
>TU1404307
AAGACTACCAGAGCACCATCATGTAAAATGTTCCTTCCTGATGCTGTATCAATTGTAATGTCGTTGACAGAAATGTGACCATGTTCATGTTACACCACTCTGTTATGTCTTACAATGTAACATGTGCTTTGAATTATTCCTTACTCATTGAATAACTAAaaaaacacatctactgtcaagATGAAGTTTCACTACTTTAGACAAATAACAGCTGTTATCACGACAGTGATCATGACAGTGAGCAGTTACATATTGTACAAGTTCTCCTTTTAGCCATTTCTCATGGTCTTGCACAGTTTTCCATTTAGTATTATCAAGCGATCAACACCGTACAGTAGAGTATCACTGGTTTGCCGCTGTGAACACACCAACCAGATTTTTGATCGGTGTGAAGTTCCTCATATCCTTAGAATGGAACAAGGTAAATATTAACAAAACCAATCAAACAATAAACATGTGAAATGCTTGAGTTATTTGAGCTAAATTCCCCTTGAACCACACCCTGTCTGTCACCACTGTATACTGCAGCCAGTGCCGAGTCCATTTCTGTAGTGTTGCCTTTTCCATTCTGCTTCACAACacgaggacaccacagaagaagctaTTGGGTTAGCTAGAACAGAGAGTTGTACCAACAATACCTACATGACAATTCAATGGTGGGGCCTTTTACTGGAACAGTGGTTTATTTTGGCCTGCCTACCATTTCACATATCAAAATGGTGATCCAGGAAGCATATTTGGATTCTTCCTGGCACTGCACCAACAACTGAATCCTGTCAATAAGAAACTATAGAAACCCAAGCATGAAAATGGAGACGGAATGTACAGTAAAACATTCAACGCTGAATCAGAAAATGAGCAAGAATAAAAATGaccatcacacacacagccactgctGCTCCCAAGCTGAGGACAATGGGATCCACTGTGCTTCCTGGGATGAAAATACATTTAACATGTTtgtttgatgttttatgttaagcTTGCATAGTTGATAACACAATTTATTTCGATTTGACCCATTTAAACTAAATAATGGTACCTATAAAATATGCTTAAATGTTTCGATAAAGAAGTGTAAGGTGCTTTATCAATTTAATAAAAAGTTGTACCTTTAATGATGTTAAGTTTTGTTCCTTCACCAAACAGGATCTCCCCACATGTGGCCACAGCACAGTAGTAAGTCCCAGCATCAGAGAGACTGAGGTTGTTCTTGGAGAAGCTGTAGACACAGCTTTGTGTTGGAGAGGGAGTCTATGGGCTCTTCTTACACCCATCTCTCCTGTTCCCAGGGGTGTAAATGACTC

Function

NR:

description
uncharacterized protein LOC110487757

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468511.2 False 549 mRNA 0.36 3 24599699 24681427
TU1404307 True 1310 lncRNA 0.39 3 24599526 24682015

Neighbor

gene id symbol gene type direction distance location
LOC110489023 LOC106604495 coding downstream 19162 24563389 ~ 24580537 (-)
LOC110489025 LOC106604425 coding downstream 41442 24556733 ~ 24561862 (-)
LOC110487755 LOC106604493 coding downstream 62371 24497380 ~ 24537328 (-)
mcm7 mcm7 coding downstream 104137 24481675 ~ 24495562 (-)
LOC110489021 LOC106604492 coding downstream 120502 24476608 ~ 24479197 (-)
LOC110489477 LOC106604496 coding upstream 24968 24706395 ~ 24709307 (-)
LOC118938708 LOC106604508 coding upstream 181517 24862944 ~ 24864488 (-)
LOC110489031 NA coding upstream 190514 24871941 ~ 24873666 (-)
LOC110487758 LOC106604498 coding upstream 223125 24904552 ~ 24906407 (-)
LOC118938754 NA coding upstream 852644 25534071 ~ 25534394 (-)
G1230592 NA non-coding downstream 50860 24548405 ~ 24548839 (-)
G1230591 NA non-coding downstream 52973 24546459 ~ 24546726 (-)
G1230590 NA non-coding downstream 54899 24544374 ~ 24544800 (-)
G1230587 NA non-coding downstream 59998 24539099 ~ 24539701 (-)
G1230576 NA non-coding downstream 66356 24533121 ~ 24533343 (-)
G1230669 NA non-coding upstream 31239 24712666 ~ 24757600 (-)
G1230781 NA non-coding upstream 237287 24918714 ~ 24919016 (-)
G1230836 NA non-coding upstream 265045 24946472 ~ 24999719 (-)
G1230863 NA non-coding upstream 300539 24981966 ~ 24985703 (-)
G1230835 NA non-coding upstream 307185 24988612 ~ 25003124 (-)
G1229693 znf518b other downstream 726135 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 2366408 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3876463 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 4129176 20465730 ~ 20470523 (-)
G1232240 NA other upstream 1421919 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 2299283 26979968 ~ 26990318 (-)
G1233612 NA other upstream 2311366 26992793 ~ 26993184 (-)
si:dkeyp-115e12.6 LOC106604388 other upstream 2319289 26995966 ~ 27001492 (-)

Expression


Co-expression Network