LOC110489477 (LOC106604496)


Basic Information

Item Value
gene id LOC110489477
gene name LOC106604496
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24706395 ~ 24709307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562175.2
ctaacaggaagtgtAGCATGATTTAGTTTTCTCCAGCCTATCAGATAGGTCTGTGAGTATAGACTTGCCATTTTTGCATTTCATGGGCAGAGGACAACTGCACCAGACGTGTAAGAGCTACTCACCAAGATGATCAAAATTGGAGTGATTGTGGTACTTCTCAGTTTGATGTATGTGACACAATGCAATGATGTTCAGTATCAAACTCAAGTTCGGGAGGTTCATCCTGGGGACCCAGTGACACTATACTGTGTTTTTTCAAAGGAAGATCTCAATATGTTCTGGTACAAACAAATGGTGGGGCAAAAGCCTCAAACTATTGTAACAATGACAAAATATGATAAGCCTGTATGGCACAAGGACTTTAACCATTCACGTGTCAATGTGGAGAAGGCTGATGCTGATGGGATGTATCGACTTGCTATTACAAACACGGACCCAACAGATGAAGCCGTTTACTATTGTGCAGTGAGAACAGCCTATGAAGTCAACTTTATCAATGGGACTCTTTTACTATTAAAAGGTAAGAATCACCAGAGGTCACACTACCATACCGTGGTGCAGAGGCCAGTGTCTGACCCAGTCCATCCAGGACACTCTGTGACTCTGCTGTGTACAGTACTCTCTGAGACCTGTACAGGAGAACGCAGTGTGTACTGGTTCAGAGCCAGATCAGGAGAATCCCATCCAGGAGTAATTTACACCTCTGCGAACAAGAGTGATGAGTGTAAGAAGAGCCCTGAGACTCCCTCTCCTACACAGAGCTGTGTCTACAGCCTCTCCAAGAACAACCTCAGTCTCTCTGATGCTGGGACTTACTACTGCGCTGTGGCCACATGTGGGGAGATCCTGTTTGGCAATGGAACAATCCTGAATATTAAAAAAGCAACAGATCCTGTAATCATTGCTCTGGGAGTGACCTCGGCCGTCTGTGTGATTGGGATCCTTATCCTCATCTGCACCAGACATACTAGATCAGTTTGTGAACATTGTAAAGTGGGTGCTTCTCAGCATATCAGACCTGACAACTCAACTAGAGAATCAAGCAGCAAGGATCAAGATGCAGATACCCTGAATTATGCTGCATTGCATTTCTCTGAGAGGAAAACTAAAAgaggaagaaagaagagagagacaccacaggagaGTGTGTACTCTGATGTCAGGTGTTCAGACTGGGACTGAACGACAGTGCAGAGGAATACATTTGTCAAAAATCTATTTTTTAATTGCTATTATATACTTTGTCAAGACAAAAAGCAACACTCTTTTTGTATCATAGAGCTTCGGGGTTTTTCTCATCTCTGCAACCAAGAATCAAATCCATTTTCTAGACTAATGTGAGTAGCAGAATCAAGACAGTCTCTTTCCTGTACGTTATTGTTCATGTTTTCACTTAATTCATGAATTGATCCCAATTGTTGTTGTAATGTTAAATTAACCTTGTGATATTTACCACAGCATTTCTTGAGTTCAAATTTGAATTTATGAATCTgttgatgtacagtatattttgCTTTATTACATTACAAAATGTAACATTgcacattaaaacacatttcaccagaaaatattgtttccatGTGAACCCAGTGCAGTCTCTCAAAGTTATATTAACAATGTCATAATGAAATCATGACAAACCACCATACTGCTTCCCATTGGTGATCTGGGCACCCTTTCCAaccatgtacatactgtatgtccacATGGTACCGTCCTCATTCAAGAACTTGACAACACTCCCTCTTACAATTCCTACAAGATACCCACACTGCAGTTTCACTTATACCCTGTTCATACTGAAAAACTGAGCTTTA
>TU1404397
CCCTTAGATAACCAACCAGGTTGTTGGTGGgaaaatctaacaggaagtgtAGCATGATTTAGTTTTCTCCAGCCTATCAGATAGGTCTGTGAGTATAGACTTGCCATTTTTGCATTTCATGGGCAGAGGACAACTGCACCAGACGTGTAAGAGCTACTCACCAAGATGATCAAAATTGGAGTGATTGTGGTACTTCTCAGTTTGATGTATGTGACACAATGCAATGATGTTCAGTATCAAACTCAAGTTCGGGAGGTTCATCCTGGGGACCCAGTGACACTATACTGTGTTTTTTCAAAGGAAGATCTCAATATGTTCTGGTACAAACAAATGGTGGGGCAAAAGCCTCAAACTATTGTAACAATGACAAAATATGATAAGCCTGTATGGCACAAGGACTTTAACCATTCACGTGTCAATGTGGAGAAGGCTGATGCTGATGGGATGTATCGACTTGCTATTACAAACACGGACCCAACAGATGAAGCCGTTTACTATTGTGCAGTGAGAACAGCCTATGAAGTCAACTTTATCAATGGGACTCTTTTACTATTAAAAGGTAAGAATCACCAGAGGTCACACTACCATACCGTGGTGCAGAGGCCAGTGTCTGACCCAGTCCATCCAGGACACTCTGTGACTCTGCTGTGTACAGTACTCTCTGAGACCTGTACAGGAGAACGCAGTGTGTACTGGTTCAGAGCCAGATCAGGA

Function

NR:

description
uncharacterized protein LOC110489477

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562175.2 False 1820 mRNA 0.41 6 24706395 24709271
TU1404397 True 714 TUCP 0.44 3 24707961 24709307

Neighbor

gene id symbol gene type direction distance location
LOC110489029 NA coding downstream 24968 24599526 ~ 24682015 (-)
LOC110489023 LOC106604495 coding downstream 125858 24563389 ~ 24580537 (-)
LOC110489025 LOC106604425 coding downstream 148138 24556733 ~ 24561862 (-)
LOC110487755 LOC106604493 coding downstream 169067 24497380 ~ 24537328 (-)
mcm7 mcm7 coding downstream 210833 24481675 ~ 24495562 (-)
LOC118938708 LOC106604508 coding upstream 153673 24862944 ~ 24864488 (-)
LOC110489031 NA coding upstream 162670 24871941 ~ 24873666 (-)
LOC110487758 LOC106604498 coding upstream 195281 24904552 ~ 24906407 (-)
LOC118938754 NA coding upstream 824800 25534071 ~ 25534394 (-)
LOC110489032 LOC106604502 coding upstream 888100 25597371 ~ 25979494 (-)
G1230580 NA non-coding downstream 34448 24671343 ~ 24671947 (-)
G1230607 NA non-coding downstream 91899 24603554 ~ 24614496 (-)
G1230584 NA non-coding downstream 102447 24561865 ~ 24603948 (-)
G1230592 NA non-coding downstream 157556 24548405 ~ 24548839 (-)
G1230669 NA non-coding upstream 3395 24712666 ~ 24757600 (-)
G1230781 NA non-coding upstream 209443 24918714 ~ 24919016 (-)
G1230836 NA non-coding upstream 237201 24946472 ~ 24999719 (-)
G1230863 NA non-coding upstream 272695 24981966 ~ 24985703 (-)
G1230835 NA non-coding upstream 279341 24988612 ~ 25003124 (-)
G1229693 znf518b other downstream 832831 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 2473104 22228319 ~ 22233369 (-)
G1225875 NA other downstream 3983159 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 4235872 20465730 ~ 20470523 (-)
G1232240 NA other upstream 1394075 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 2271439 26979968 ~ 26990318 (-)
G1233612 NA other upstream 2283522 26992793 ~ 26993184 (-)
si:dkeyp-115e12.6 LOC106604388 other upstream 2291445 26995966 ~ 27001492 (-)
G1234483 NA other upstream 3337307 28046578 ~ 28050952 (-)

Expression


Co-expression Network