LOC110489085 (LOC106604399)


Basic Information

Item Value
gene id LOC110489085
gene name LOC106604399
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 26806115 ~ 26812021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943192.1
GTGGTTGACAGGCAGTCGAGGTTGCAGCAGGCTGAGGGAGACGGTGGAAGGTAAGCAGGAGGCAGCATCATGGCGGACAGAGACAGTGGCAGTGACCACGGAGGGCTGGCCACAGGCCCCGGCTCCCTGCCTCCGGGCGCGATGGGCGCCGCGGCAAGACTGCAACACGACACGGAGGAGCTCGCGTCAAAGCGAGTCGACATCCAGAATAAGCGCTTCTACCTAGACGTGAAGCAGAATGCAAAAGGCCGCTTCCTAAAGATAGCCGAGGTCGGAGCTGGGGGAAATAAGAGCCGCCTCACTCTCTCTATGTCAGTGGCAGTGGAGTTCCGTGACTATCTCGGGGACTTCATCGAACATTACGCCCAGCTGGGCCCGAGCAACCCGGATATAGTGCAGGATGAGCCCCGGCGTGCCCTCAAGAGCGAATTTCTAGTGCGAGAGAATCGCAAATATTACATGGATCTGAAAGAGAACCAGAGGGGGCGGTTCCTAAGGATCCGTCAGACCGTTAATCGGGGGCCCGGATTGGGAAGTGCACAAGGCCAGACCATCGCGCTTCCAGCGCAGGGACTTATCGAGTTCCGTGACGCTTTGGCCAAACTCATCGATGATTACGGTGTGGACGAGGAACCAGCAGAACTACCCGAGGGCACTTCCTTGACTGTTGACAACAAACGCTTTTTCTTCGACGTGGGTTCTAACAAGTACGGAGTGTTCATGCGGGTCAGCGAGGTGAAGCCTACCTACCGGAACTCCATCACTGTTCCGTGCAAAGTGTGGTCCAAATTCGGCAACACGTTCTGTAAATATGCGGAGGAGATGAGAAAGATCCAGGAGCGGAGTAGAGAGAAACGGGCCTCCGAACTCCTACCGGAGGGCCAACATGGTGACGACGGGGACGATGATTGACGGATTACCGGCTTGAGCAGAAATAAATAACAACAAACAACAGACTTTATAATCAGACTTTTACTGTAAAATATAAAGAGAGAATTCCAAGGGAACCACCCCACACACAACCTTCACAGTCAGACTGGCAGTAGCCTACTGTCTCGTCGTTCATTGCTGGATGTCACCCACTTACCAACCATTTTAACAGTAAGCCGCTGCTATCAATAACTTGTTTGAACTGTAAAATATGAACTGTTTCCTACTTGATTTAAATGACAATGAACAGAGTGTTTATTGCTCTAACAAACAACCCGAGTTTGCACACGTCCAAGTTATTTCGGAAAGGTTTCCAAAGTGCAAAACGAAAAAAAAACCTAAATTGGAAATTACGAAGATCTCCATGTAAACCAACATTTGACATcagcacaaatatatatatatatatatatatatgataaatTACTTTACCAAACCAATATCTGAAATCAGTTGTAGTTTATTAATATAAGGTACGCAGGAAATAAAAAGTAAAGCGCTATCTATTAACGTGTACTGCAGAATGCAACGCACAGACTGAAAAAAATAGACACTTCTGCCAATATGCGTAGGCCTAAATCTCTTTTAAAAAGGCATTTGGGAAAGTTATAGTGTTTAATTTGATCGAAAATGTAGTTATGAAACGCGTTTTTATCATGTCATAGGCctacattatggagtattttatGAGAGCAGAGTCGATATTGGACTAAACGGGATAGAAGCATCTTTACTATTGAATATCAACCCTTTTGCACCATGTCCATTCAAATTTGGAACAATGGTTAGATAAAAAAAATTTGCTAACTTAGATATACTAATTATGATTTTGTGAATCAGCTGTATTTAAATCCTAAAATGCCCACGTTTTCTGTGGGCGAGTTTTCTTTTTCGGGGGAGGGTGGGATGGGGCACAAAAACCAGATGCTCAACCGGTGATGGCAGCGCGAGACGCGGAAAAAGACGCATCAGCGCGCGGCTACATGCATGCTGAGCCGCGAGGGCGCATCCTCTCTGACGTCAGAACAACCTGGTGCCTTATACACTCCACTCGTTTACGTGCTTCACATTGTGGTCGATGTTAATGATATCTCTCTCGACCACTGTATGTTTTCATTTGTAAGTTCTGTACTGTTTGCTGTATGGCTATTGGTCAACACTAACAAGCCAAACCAGAGAGGCCCTTTTCTGTAGCCTGTCTCCCTCCACAGGCAGGCGAGCAGAGAATGGCCCCTagaacagcaacagcagcagcacttCTAATGTGAGCATGGATAGTCATCAGAGATGTGAGGTTGTGTCTGTCCACCTCTTGCACCATGTAAAATGTAACTGGACGTATACAgtagtcagtcagtggggatgagatggatgatggatggatgccCTAAGAGCCCCTTGTGAGGTTTTTCTGGATGTAGGCCAAAAGGCCAAGGCAGTATCTTTCTATGGTGCTACAGCTCCAATATAATCCAAACTAGACCGGGCTTGCTGGTCTAATTTGTCACAGCATTATTTGATTTCTCAACGTTACTCTCCACATGTTGTCAGAGCAGCAGTCTCCTCCTACACAGGGTGATGACAGACTGTGAGGACATTACTTTATAGTGTGCAATATTGTACGTGCCAATCGTGGCATTGTATGTTGTATAGACAAAAAAAAAGGCAAATATATATGTGATTGATATTTGAAAAGCATGAGTCTGAATTCTGCATTGTTACAGAAATGTGAAGTCTTTCTCTGCATTTAAGTGAAAAGGTTTCAAACTAGTGTGAGATTTCCCATCACTTTCATATACAGTAAGCCCACTGTGTTTCAGTGAGTGTTGGCAAGTTTCTGATGTTTCTCTTTCCACAGAATCGCTACAGTGACATAGCTTATCCCGCCCACAAATCAGAAAGCTTATCTCCTCATCTTCAGGTCAGTGTTAGAAGCACAGTCCTGCCCCTTCTGAGTGTCTTATAATTTGATAGAGTAGTATCATGAAACGTTTTAGTTTTACTGGGATAAATTATTCCAAGTCAGAAGGAGAAAAGTTCAATGAAAATGACACGATGTCAACAAATTGATGTGGTGACAGAGGGGGTTGCCCTGACGATGAAGTGACCAACCATTCTTCCTGGGGTGAAGACAGAATCATTTTGACAGTTACCCAGCATTCCTTGCTCTCAGTCCACCAGTAAACAATGCCATAGAGGATTTCTTTAAGCGTTGATTAACAATCAGCCAGCTAGGTTAACCATCAGTAGCTGGATTTAGAGCATCACAGGGTGGCTTGGATTAGTTTAGTAGATCTAAacctactgcactgtactgtactgccatCAGGCCGGCTGGCGTGATGTTGAGGACAGACTGAGCAGCAGTAGGTAGGTCTGCTATAATTCCACCAGCCATTTGGATTCGGTCAGAGTTACAACTGTAAGAAAGAGGCCTCGAGATGCATGGGTCCCTATGTGGGGCCCCATATAGGACCCCTATTAAATGTCCCTTTACTAGGCTAGCATTAAAGCTTCATGGGTTTCTCTCCTCTTTTGGAGAGAAACCCATGACACTGCCTAACACTGCCCCAGAATTTCAGAGGGATCTTTTACATAGCAGGTAAACTGTGGATTTGACTCTATGTTGTGCTCTACACATATAAAGAACATTTAGAAGCCAGAATTCAGTCAAACCTCCAGTACCGCTGTGAAAGACCAAATGCTATTTCTACACAGTAAATGCTTGATTGAATACATTCAGGCTTTGAATGCGAGACATTAAGCCTGGAAATTCAATACACCATTTTCACAACTCTCTTACTGGCCAGCCCTAGAGAAACGAAGGCTATAGTCAATCAGATCAAGTGTTAACTGGCGATAGCAAACACTcgcatagctgatgttttggcggTGTCCGAAGTGGAACtgcgttggagctgtcaaatcggtgagcagctgagatcattgtcatgaagccacacccgtcccactcgcgttagaagttcagaacgagaaagtgtaggctatatagaaataatgacgtTCAAATTGAAAATCATTTAACATTTcatgaggatttctatcagctTAATTGagctgtagattacatctcacattccagtgtttgaACTTGTAAATATGACTCcatgggatttctcttaatgcGACTTCATGCAGCCAATAGCAATGTGCGGTTTAGGTATGATGCCgggagccacttgtggatttgacagctctaacgcgGTTCCACCTCCTACACGTCAATATATCAGCTATGTGGATGTcggctaaagcggatctgatttAATGGGGCCATAATTCTAACTCATTCAGCTCACGTTTTATGTTTGTATGCCTCGCTCTGTAAAACgcacataaaaaataaattataattaAACAAAAGTGATTATTTTTTTTGTCAGTTCACAAGGTGCTACTGGGTCCGTTCTGGTTCCGGAGTGGCATGGTTCTGTGTAATAGATTCTAGAACACTGCCTATTTTAAAGGATCAACACAGTGTTGGGTCAGAACCAACTGCCACGGTTTAGAGCTGATGATTTCGCCATGTTGCTCACATTGCAGTTAATCAATGGAACACAAAATGGACGCCAGGTGTTTTTGCCCCATAATCAAAACCTGCAGTGGGTTGATTGTAACTGTGCAGCAGCTTGGCTAGTTCAGTTCAGTGTAacattggtggtggtggtggtggtgctgtttgCATCAGAGAGAGATGTCTTAGAATTGATTAACTATTAGAGGTGCTTTGTTCTTCTTATTTGTACTAGTTCTTAATGgtgggaatgtgtgtgttttgatCTAAACAACAGCTGCATGACCATGGTAACAACCTCTACCAGTCCCTTTAGAGGTGTGGTCTTCTGGAATCTCTCCCACTACAATTTCAACTTCCATTCATTCTACGAAGCTGTTTAAATAACCATTAAATTGAGTTTCAGTGTTCTATTGTTGCTATGACGTTTCTCTGGTCCTTCAAGTTCAGACCAATCACTCACAGACAACGTCAATAATGGGAAAGGCCAATCACAATCTTGTTTGTGAAGCCAACAGTCACCTTGACCATTACTAGCTCAGCACACATTCTGTTTTGCACATACCAATGCAGAGTCCTTCATGTATGcagactgtataggctactgTTATGTACAGGGACGAGACATTGGGAAAAGGATCTATAAAAGtcaatggggaggaagagggtcAATGCACAATGAACATATCCCATGTCACCGTATGGTCTAACTACCCTTTATCAACCCTATATGATATGTTGCACCTTTCAAAATATTttatctgtggtgtgtgtgtgtgtatatgatgaTCCTTGTTTCAGAAAAATATAACATATAAACAGGAAAAGCatattgctgtttttttttcttttgtaTTTTATACTTACAGAAAGCATTGAATAAGATGGATAAATACTTGCACTTTAGATAtattaagaaaataaaaaatctgcATATTATTTTTGATAGGGATCTCACATTCAGAGAGTATAAATAACTTTCCAGGCTTTGTGACATTGCTGGACAGAGATGTATCAAGTTCTTCTACTTATTGAAGTATATTTTGTCTGTGTTTCAGAAGGTTTACTAAAGTAAATTGCATGATAAAGTAGTGTTACACCAATATTGATATTTTTAGTTGGTATAAAGGTCTGAAAACTGTGATGTACCATGTTTAACTTTCCCCCCATACATTCTAGAGTAGTTCTTACTGATTTATGGCCTTTCCTGACTACATGACGATGGTGCTTAATTTGGCTTTGAAAAATCTGCTCATCCTACATTTGACATCATCATAACTTGTATCTTACTGTACTTCATTACTTTGTTTATGTACTTTCACTACCTTATTAAATTTTAGTTGATGGCAAAACGTGTGCTGTTTTGTACGTTGTTGTTTTAATGTTGGAAAAGCCTTTGTCGTCTGAAAATGACTAATTGCAATAAACAGGCATTCCTCATG
>TU1407433
ACCAGATGCTCAACCGGTGATGGCAGCGCGAGACGCGGAAAAAGACGCATCAGCGCGCGGCTACATGCATGCTGAGCCGCGAGGGCGCATCCTCTCTGACGTCAGAACAACCTGGTGCCTTATACACTCCACTCGTTTACGTGCTTCACATTGTGGTCGATGTTAATGATATCTCTCTCGACCACTGTATGTTTTCATTTGTAAGTTCTGTACTGTTTGCTGTATGGCTATTGGTCAACACTAACAAGCCAAACCAGAGAGGCCCTTTTCTGTAGCCTGTCTCCCTCCACAGGCAGGCGAGCAGAGAATGGCCCCTagaacagcaacagcagcagcacttCTAATGTGAGCATGGATAGTCATCAGAGATGTGAGGTTGTGTCTGTCCACCTCTTGCACCATGTAAAATGTAACTGGACGTATACAgtagtcagtcagtggggatgagatggatgatggatggatgccCTAAGAGCCCCTTGTGAGGTTTTTCTGGATGTAGGCCAAAAGGCCAAGGCAGTATCTTTCTATGGTGCTACAGCTCCAATATAATCCAAACTAGACCGGGCTTGCTGGTCTAATTTGTCACAGCATTATTTGATTTCTCAACGTTACTCTCCACATGTTGTCAGAGCAGCAGTCTCCTCCTACACAGGGTGATGACAGACTGTGAGGACATTACTTTATAGTGTGCAATATTGTACGTGCCAATCGTGGCATTGTATGTTGTATAGACAAAAAAAAAGGCAAATATATATGTGATTGATATTTGAAAAGCATGAGTCTGAATTCTGCATTGTTACAGAAATGTGAAGTCTTTCTCTGCATTTAAGTGAAAAGGTTTCAAACTAGTGTGAGATTTCCCATCACTTTCATATACAGTAAGCCCACTGTGTTTCAGTGAGTGTTGGCAAGTTTCTGATGTTTCTCTTTCCACAGAATCGCTACAGTGACATAGCTTATCCCGCCCACAAATCAGAAAGCTTATCTCCTCATCTTCAGGTCAGTGTTAGAAGCACAGTCCTGCCCCTTCTGAGTGTCTTATAATTTGATAGAGTAGTATCATGAAACGTTTTAGTTTTACTGGGATAAATTATTCCAAGTCAGAAGGAGAAAAGTTCAATGAAAATGACACGATGTCAACAAATTGATGTGGTGACAGAGGGGGTTGCCCTGACGATGAAGTGACCAACCATTCTTCCTGGGGTGAAGACAGAATCATTTTGACAGTTACCCAGCATTCCTTGCTCTCAGTCCACCAGTAAACAATGCCATAGAGGATTTCTTTAAGCGTTGATTAACAATCAGCCAGCTAGGTTAACCATCAGTAGCTGGATTTAGAGCATCACAGGGTGGCTTGGATTAGTTTAGTAGATCTAAacctactgcactgtactgtactgccatCAGGCCGGCTGGCGTGATGTTGAGGACAGACTGAGCAGCAGTAGGTAGGTCTGCTATAATTCCACCAGCCATTTGGATTCGGTCAGAGTTACAACTGTAAGAAAGAGGCCTCGAGATGCATGGGTCCCTATGTGGGGCCCCATATAGGACCCCTATTAAATGTCCCTTTACTAGGCTAGCATTAAAGCTTCATGGGTTTCTCTCCTCTTTTGGAGAGAAACCCATGACACTGCCTAACACTGCCCCAGAATTTCAGAGGGATCTTTTACATAGCAGGTAAACTGTGGATTTGACTCTATGTTGTGCTCTACACATATAAAGAACATTTAGAAGCCAGAATTCAGTCAAACCTCCAGTACCGCTGTGAAAGACCAAATGCTATTTCTACACAGTAAATGCTTGATTGAATACATTCAGGCTTTGAATGCGAGACATTAAGCCTGGAAATTCAATACACCATTTTCACAACTCTCTTACTGGCCAGCCCTAGAGAAACGAAGGCTATAGTCAATCAGATCAAGTGTTAACTGGCGATAGCAAACACTcgcatagctgatgttttggcggTGTCCGAAGTGGAACtgcgttggagctgtcaaatcggtgagcagctgagatcattgtcatgaagccacacccgtcccactcgcgttagaagttcagaacgagaaagtgtaggctatatagaaataatgacgtTCAAATTGAAAATCATTTAACATTTcatgaggatttctatcagctTAATTGagctgtagattacatctcacattccagtgtttgaACTTGTAAATATGACTCcatgggatttctcttaatgcGACTTCATGCAGCCAATAGCAATGTGCGGTTTAGGTATGATGCCgggagccacttgtggatttgacagctctaacgcgGTTCCACCTCCTACACGTCAATATATCAGCTATGTGGATGTcggctaaagcggatctgatttAATGGGGCCATAATTCTAACTCATTCAGCTCACGTTTTATGTTTGTATGCCTCGCTCTGTAAAACgcacataaaaaataaattataattaAACAAAAGTGATTATTTTTTTTGTCAGTTCACAAGGTGCTACTGGGTCCGTTCTGGTTCCGGAGTGGCATGGTTCTGTGTAATAGATTCTAGAACACTGCCTATTTTAAAGGATCAACACAGTGTTGGGTCAGAACCAACTGCCACGGTTTAGAGCTGATGATTTCGCCATGTTGCTCACATTGCAGTTAATCAATGGAACACAAAATGGACGCCAGGTGTTTTTGCCCCATAATCAAAACCTGCAGTGGGTTGATTGTAACTGTGCAGCAGCTTGGCTAGTTCAGTTCAGTGTAacattggtggtggtggtggtggtgctgtttgCATCAGAGAGAGATGTCTTAGAATTGATTAACTATTAGAGGTGCTTTGTTCTTCTTATTTGTACTAGTTCTTAATGgtgggaatgtgtgtgttttgatCTAAACAACAGCTGCATGACCATGGTAACAACCTCTACCAGTCCCTTTAGAGGTGTGGTCTTCTGGAATCTCTCCCACTACAATTTCAACTTCCATTCATTCTACGAAGCTGTTTAAATAACCATTAAATTGAGTTTCAGTGTTCTATTGTTGCTATGACGTTTCTCTGGTCCTTCAAGTTCAGACCAATCACTCACAGACAACGTCAATAATGGGAAAGGCCAATCACAATCTTGTTTGTGAAGCCAACAGTCACCTTGACCATTACTAGCTCAGCACACATTCTGTTTTGCACATACCAATGCAGAGTCCTTCATGTATGcagactgtataggctactgTTATGTACAGGGACGAGACATTGGGAAAAGGATCTATAAAAGtcaatggggaggaagagggtcAATGCACAATGAACATATCCCATGTCACCGTATGGTCTAACTACCCTTTATCAACCCTATATGATATGTTGCACCTTTCAAAATATTttatctgtggtgtgtgtgtgtgtatatgatgaTCCTTGTTTCAGAAAAATATAACATATAAACAGGAAAAGCatattgctgtttttttttcttttgtaTTTTATACTTACAGAAAGCATTGAATAAGATGGATAAATACTTGCACTTTAGATAtattaagaaaataaaaaatctgcATATTATTTTTGATAGGGATCTCACATTCAGAGAGTATAAATAACTTTCCAGGCTTTGTGACATTGCTGGACAGAGATGTATCAAGTTCTTCTACTTATTGAAGTATATTTTGTCTGTGTTTCAGAAGGTTTACTAAAGTAAATTGCATGATAAAGTAGTGTTACACCAATATTGATATTTTTAGTTGGTATAAAGGTCTGAAAACTGTGATGTACCATGTTTAACTTTCCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943192.1 False 5907 mRNA 0.43 1 26806115 26812021
TU1407433 True 3784 lncRNA 0.42 1 26806389 26810172
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489087 LOC106604401 coding downstream 66649 26731731 ~ 26739466 (-)
ppp3cb LOC106604405 coding downstream 107899 26653944 ~ 26698216 (-)
LOC110487764 tmem173 coding downstream 160717 26638079 ~ 26686596 (-)
LOC100136335 ddit4l coding downstream 172896 26630880 ~ 26633219 (-)
trnaa-agc-5 NA coding downstream 207135 26598908 ~ 26598980 (-)
eif1ad eif1ad coding upstream 61766 26873787 ~ 26881883 (-)
LOC110489081 ctsw coding upstream 69953 26881974 ~ 26895184 (-)
kcnk4a LOC106604391 coding upstream 167947 26979968 ~ 26990318 (-)
si:dkeyp-115e12.6 LOC106604388 coding upstream 183945 26995966 ~ 27001492 (-)
stx5a LOC106604387 coding upstream 214827 27026848 ~ 27036380 (-)
G1233440 NA non-coding downstream 1952 26800665 ~ 26804163 (-)
G1233450 NA non-coding downstream 7813 26796424 ~ 26798302 (-)
G1233417 NA non-coding downstream 55102 26750795 ~ 26751013 (-)
G1233386 ube2d1 non-coding downstream 94187 26700348 ~ 26711928 (-)
G1233462 NA non-coding upstream 7771 26819792 ~ 26820020 (-)
G1233463 NA non-coding upstream 9579 26821600 ~ 26821813 (-)
G1233470 NA non-coding upstream 24916 26836937 ~ 26837139 (-)
G1233472 NA non-coding upstream 27310 26839331 ~ 26839552 (-)
G1233474 NA non-coding upstream 30228 26842249 ~ 26842479 (-)
G1232240 NA other downstream 640712 26103346 ~ 26165403 (-)
LOC110489477 LOC106604496 other downstream 2096808 24706395 ~ 24709307 (-)
LOC110489025 LOC106604425 other downstream 2244253 24556733 ~ 24561862 (-)
G1229693 znf518b other downstream 2932551 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 4572824 22228319 ~ 22233369 (-)
G1233612 NA other upstream 180772 26992793 ~ 26993184 (-)
G1234483 NA other upstream 1234557 28046578 ~ 28050952 (-)
med7 med7 other upstream 1320919 28132248 ~ 28134104 (-)

Expression

LOC110489085(LOC106604399) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110489085(LOC106604399) Expression in each Bioproject

Bar chart with 20 bars.
LOC110489085(LOC106604399) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location