kcnk4a (LOC106604391)


Basic Information

Item Value
gene id kcnk4a
gene name LOC106604391
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 26979968 ~ 26990318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943635.1
ATGCGGTGCCCCACCCTGCTGGCCCTGCTGGCAGGGGTCATGCTATACCTGGTGATAGGGGCGCTGGTGTTCCGGACCCTGGAAAGCCCCCAGGAGAGCAAGGAGCACGAGAAGCTGCTCCGTACCACACGTGACTTCCTCCAAAACCACTCCTGTGTCACCGCACAGAACCTCAGCGATCTCAtcatgAACACAGACCCCAGATGTAGCCCtagtctgtctgttctgtctctgtactGTCAGAGTGTGGTGAAGGCTGTGGAGGCGGGCCTGGATGTCAAACACAGCTCCACCAACTTCACTAGCAGGTGGGACCTGGCCAGCgccttcttcttctgtggtaccatcatcaccaccatcgGGTTTGGCAACCTGTCTCCCAGGACCAAATGGGGCCAgctgttctgtgtgtgttatgCCCTGGTAGGGATCCCTATGTTTGGTTTCCTGCTGGCTGGTGTCGGGGACCACATGGGGACGGGACTGAGGAAGGCCGTGTGGAAGATGGAGACACTCTTCCTGAAGCGGCGGGTCAGTCCCACTTATGTGCGGGTCATGTCTGCTGTTCTGTCCATCCTGATTGGCTGTCTGATCTTCCTCGCCGTGCCAACGCTGGTGTTTAAGGAAGTGGAGGACTGGTCCTTTCTGGAGGCGCTCTACTTTGTGGTCATCACCCTGACCACGGTCGGCTTCGGAGACTATGTAGCAGGTGCTAACCGGCGGGACGGAGATCTGTTTAAGCCCCTGGTGTGGCTCTGGATAGTGTTTGGCCTGGCTTACTTTGCTTCCATACTCACCATGATCGGCAACTGGCTGCGGGTGCTGTCCAAGAAAACACGTGCTGAGatggaggAGTTGAGGGCCCATGCTACAGACTGGACACAGAACATCCAGAACATGTCCATGGACTTCCGGATCCCCAACCCTCTGGAACTCAACGACCCCTTCCTGCTGCAGCGGCGCCGCTGGAGACGCAGCACCCGGCAACGGGTCCGCAGGGGGGCGCTGGGGCACCGCGGCAGGCAGGGCGCCATAGAGGAGAACGGACATCTGCCCAATAGGTGGGTCACACGCTCCATGACCCGTCTGGAGGTCGTGAGGTTAGGGGGGGGTGAGGTTAGGACTGAAGGGGTGAGGTTAGGACCAGGGAGGGGGCTAGGGGTAGGTTTGAGGGCAGATTGCAGGGTCAATGCGAGGTCAGAGGGCCGGACGGTTGCGAGGTCACTGTCGATGCCTTCGGCACGCTCCGTGATGGAGTTAGACTATGACCCTGATCCTGTTGCGATAATGATGATGCCATGGGAGTCGGGCTCTGTGTCCGAGTCTCCAgagtctgactccagatcagttGTCTCCTCCTCTGACTCTCACACCTCTGACATGTGTATGCCAGGGCGGAGGATGCCTTTTGCTAGTTTTGACCCCAGTGGGTCTCTCTGTACTGAACAGAGGGGACGCCATGGAGGATCCAGGCTGGTATATTTCAAGGAGGATGTCCGGTTCCCTGTGCCTCTCCGGCAACAACCCAACTCCACCATGCCGCTCCCCATGCCGCTCCCCATGCCCCCTTTGCCCACCCCGCCAGGCTGTAAGATGCTAGATTTCTTCGGGGAGAACTTGGCCTACATCGACGAGTCGTCGGACACGCTAAGTGACCGGAACCAGACGGTTGAGGGAGGTGTCAGTCCTCGTCCGCGGATACACCGCATGAGGAGgcagctgaaggagaggagggacagcGACATGCAGCCCCCCTCTAACCCGCcgactcctccccctctttcccatcTCAGAGACTGA
>TU1407600
atccctcttctcctccatcacAGTGATGTAGAGTCCTGAGCATGGGGAAACACCTTTCCCACtgccaggaacacacacacacttacttagtGGACACACACTTCTCCTCTGTGAGCTTTTGGACATACACACTTCTACTCACAGAGCGTTTGATGGTGAGAAGAGCCTGGACACCAAGAAGCACATACCATACTGGTTCTTCAGACTTCATCGTTTCTCCTGAACTCAGCCCTGGacctggtagagaggagagagagaggaggagagagaactcTCATCACCAGATCTTCAGGATGGATAAAACATGGACAACTGTGCCACCGTGTGTATCGTGGAAGAGGCCGTAGAACAGACCCTGGCGAAACCTGACTCCTGTGGTGGGGGGGTGTGCTCGGGGCGATGCGGTGCCCCACCCTGCTGGCCCTGCTGGCAGGGGTCATGCTATACCTGGTGATAGGGGCGCTGGTGTTCCGGACCCTGGAAAGCCCCCAGGAGAGCAAGGAGCACGAGAAGCTGCTCCGTACCACACGTGACTTCCTCCAAAACCACTCCTGTGTCACCGCACAGAACCTCAGCGATCTCAtcatgAGTGTGGTGAAGGCTGTGGAGGCGGGCCTGGATGTCAAACACAGCTCCACCAACTTCACTAGCAGGTGGGACCTGGCCAGCgccttcttcttctgtggtaccatcatcaccaccatcgGGTTTGGCAACCTGTCTCCCAGGACCAAATGGGGCCAgctgttctgtgtgtgttatgCCCTGGTAGGGATCCCTATGTTTGGTTTCCTGCTGGCTGGTGTCGGGGACCACATGGGGACGGGACTGAGGAAGGCCGTGTGGAAGATGGAGACACTCTTCCTGAAGCGGCGGGTCAGTCCCACTTATGTGCGGGTCATGTCTGCTGTTCTGTCCATCCTGATTGGCTGTCTGATCTTCCTCGCCGTGCCAACGCTGGTGTTTAAGGAAGTGGAGGACTGGTCCTTTCTGGAGGCGCTCTACTTTGTGGTCATCACCCTGACCACGGTCGGCTTCGGAGACTATGTAGCAGGTGCTAACCGGCGGGACGGAGATCTGTTTAAGCCCCTGGTGTGGCTCTGGATAGTGTTTGGCCTGGCTTACTTTGCTTCCATACTCACCATGATCGGCAACTGGCTGCGGGTGCTGTCCAAGAAAACACGTGCTGAGatggaggAGTTGAGGGCCCATGCTACAGACTGGACACAGAACATCCAGAACATGTCCATGGACTTCCGGATCCCCAACCCTCTGGAACTCAACGACCCCTTCCTGCTGCAGCGGCGCCGCTGGAGACGCAGCACCCGGCAACGGGTCCGCAGGGGGGCGCTGGGGCACCGCGGCAGGCAGGGCGCCATAGAGGAGAACGGACATCTGCCCAA
>TU1407603
ttatttttttactaaaaACTAAAATCCTAAAAAGAACACAGACCCCAGATGTAGCCCtagtctgtctgttctgtctctgtactGTCAGAGTGTGGTGAAGGCTGTGGAGGCGGGCCTGGATGTCAAACACAGCTCCACCAACTTCACTAGCAGGTGGGACCTGGCCAGCgccttcttcttctgtggtaccatcatcaccaccatcgGGTTTGGCAACCTGTCTCCCAGGACCAAATGGGGCCAgctgttctgtgtgtgttatgCCCTGGTAGGGATCCCTATGTTTGGTTTCCTGCTGGCTGGTGTCGGGGACCACATGGGGACGGGACTGAGGAAGGCCGTGTGGAAGATGGAGACACTCTTCCTGAAGCGGCGGGTCAGTCCCACTTATGTGCGGGTCATGTCTGCTGTTCTGTCCATCCTGATTGGCTGTCTGATCTTCCTCGCCGTGCCAACGCTGGTGTTTAAGGAAGTGGAGGACTGGTCCTTTCTGGAGGCGCTCTACTTTGTGGTCATCACCCTGACCACGGTCGGCTTCGGAGACTATGTAGCAGGTGCTAACCGGCGGGACGGAGATCTGTTTAAGCCCCTGGTGTGGCTCTGGATAGTGTTTGGCCTGGCTTACTTTGCTTCCATACTCACCATGATCGGCAACTGGCTGCGGGTGCTGTCCAAGAAAACACGTGCTGAGatggaggAGTTGAGGGCCCATGCTACAGACTGGACACAGAACATCCAGAACATGTCCATGGACTTCCGGATCCCCAACCCTCTGGAACTCAACGACCCCTTCCTGCTGCAGCGGCGCCGCTGGAGACGCAGCACCCGGCAACGGGTCCGCAGGGGGGCGCTGGGGCACCGCGGCAGGCAGGGCGCCATAGAGGAGAACGGACATCTGCCCAA
>TU1407604
TTCTTATTTggtgtccccttctctctctgcccctctctcagAAGCGGCGGGTCAGTCCCACTTATGTGCGGGTCATGTCTGCTGTTCTGTCCATCCTGATTGGCTGTCTGATCTTCCTCGCCGTGCCAACGCTGGTGTTTAAGGAAGTGGAGGACTGGTCCTTTCTGGAGGCGCTCTACTTTGTGGTCATCACCCTGACCACGGTCGGCTTCGGAGACTATGTAGCAGGTGCTAACCGGCGGGACGGAGATCTGTTTAAGCCCCTGGTGTGGCTCTGGATAGTGTTTGGCCTGGCTTACTTTGCTTCCATACTCACCATGATCGGCAACTGGCTGCGGGTGCTGTCCAAGAAAACACGTGCTGAGatggaggAGTTGAGGGCCCATGCTACAGACTGGACACAGAACATCCAGAACATGTCCATGGACTTCCGGATCCCCAACCCTCTGGAACTCAACGACCCCTTCCTGCTGCAGCGGCGCCGCTGGAGACGCAGCACCCGGCAACGGGTCCGCAGGGGGGCGCTGGGGCACCGCGGCAGGCAGGGCGCCATAGAGGAGAACGGACATCTGCCCAA

Function

NR:

description
potassium channel subfamily K member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943635.1 False 1800 mRNA 0.59 6 26979968 26985129
TU1407600 False 1403 TUCP 0.57 8 26980710 26990318
TU1407603 False 903 TUCP 0.57 5 26980710 26982650
TU1407604 True 577 TUCP 0.59 3 26980710 26981729

Neighbor

gene id symbol gene type direction distance location
LOC110489081 ctsw coding downstream 84784 26881974 ~ 26895184 (-)
eif1ad eif1ad coding downstream 98085 26873787 ~ 26881883 (-)
LOC110489085 LOC106604399 coding downstream 167947 26806115 ~ 26812021 (-)
LOC110489087 LOC106604401 coding downstream 240502 26731731 ~ 26739466 (-)
ppp3cb LOC106604405 coding downstream 281752 26653944 ~ 26698216 (-)
si:dkeyp-115e12.6 LOC106604388 coding upstream 10837 26995966 ~ 27001492 (-)
stx5a LOC106604387 coding upstream 41719 27026848 ~ 27036380 (-)
vegfba vegfb coding upstream 59766 27044895 ~ 27057298 (-)
dnajc4 dnajc4 coding upstream 74352 27059481 ~ 27071377 (-)
LOC110489068 NA coding upstream 105598 27090727 ~ 27097242 (-)
G1233558 NA non-coding downstream 3984 26975379 ~ 26975984 (-)
G1233557 NA non-coding downstream 6001 26973427 ~ 26973967 (-)
G1233556 NA non-coding downstream 7757 26970392 ~ 26972211 (-)
G1233555 NA non-coding downstream 9847 26969582 ~ 26970121 (-)
G1233554 LOC106604392 non-coding downstream 11117 26967546 ~ 26968851 (-)
G1233613 NA non-coding upstream 8318 26993447 ~ 26993668 (-)
G1233616 NA non-coding upstream 25621 27010750 ~ 27011756 (-)
G1233581 NA non-coding upstream 29812 27014941 ~ 27044877 (-)
G1233590 NA non-coding upstream 39859 27024988 ~ 27025681 (-)
G1233569 NA non-coding upstream 102459 27087588 ~ 27088708 (-)
G1232240 NA other downstream 814565 26103346 ~ 26165403 (-)
LOC110489477 LOC106604496 other downstream 2270661 24706395 ~ 24709307 (-)
LOC110489025 LOC106604425 other downstream 2418106 24556733 ~ 24561862 (-)
G1229693 znf518b other downstream 3106404 23869958 ~ 23873564 (-)
LOC110488986 LOC106604455 other downstream 4746677 22228319 ~ 22233369 (-)
G1233612 NA other upstream 7664 26992793 ~ 26993184 (-)
G1234483 NA other upstream 1061449 28046578 ~ 28050952 (-)
med7 med7 other upstream 1147811 28132248 ~ 28134104 (-)
G1234578 NA other upstream 1229194 28214323 ~ 28215776 (-)

Expression

kcnk4a(LOC106604391) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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kcnk4a(LOC106604391) Expression in each Bioproject

Bar chart with 18 bars.
kcnk4a(LOC106604391) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network