stx5a (LOC106604387)


Basic Information

Item Value
gene id stx5a
gene name LOC106604387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 27026848 ~ 27036380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561632.2
AATGACCCGGATTCAAACTTTCATTCCCGGCTTGGTAAAAACATAGAACGATCTGTGAATTCTTGTGGATTTTTGCTAATAACGTCAGACCCTTCCTCCTTGGCGTGCCCAGTGCAGGCTGGTGATATACAGGCAGCAGGATGACGTGCAGGGATCGAACCAACGAGTTCCAGTCGGCCTGCAAATCCCTACAGAGCAGACAGAATGGTGTTCAGCACACCAAGCCAGCCCTCAGTGCTCTCAAGCAACGCAGTGACTTCACCCTCATGGCCAAGAGAATAGGGAAGGACTTgagtaatacatttgctaaactaGAGAAACTCACTATATTGGCTAAAAGAAGATCTCTATTTGATGACAAGGCAGTGGAGATTGAAGAGTTAACCTACATCATCAAGCAGGACATTAACAGCCTGAACAAGCAGATAGCCCAGCTGCAGGATCTGATTGGTTCACGTGGAGCACCCAGCGGCAGACACATCCAGACCCATTCCAACACCATCGTCATCTCCCTGCAGTCCAAACTGGCGTCTATGTCCAATGACTTCAAGTCGGTTCTAGAAGTAAGAACGGAGAACCTGAAGCAGCAGAAGAACAGGAGAGAACAGTTCTCTCAGCGCcacgtctcttctcctctccacgcCAACAACTTCAagaGTTCAGTGTTGATGCAGGATGAGTCAAGGAGTATGGGGGCTGAGGTCGCCATCAACATGGACAACCAGTCTAACCCTCTACAGCTCCAGCTCATTGATGAGCAGGACTCATACATCCAGAGCCGTGCAGACACCATGCAGAACATTGAGAGCACCATCGTAGAGCTGGGCTCTATCTTTCAGCAGCTGGCTCACATGgtgaaggagcaggaggagacagtacagagGATTGATGCTAACGTGGAGGACACTCAGCTCAACGTGGACATGGCTCACACGGAGATCCTCAAGTACTTCCAGTCTGTGTCCTCCAACCGCTGGCTCATGGTCAAGATCTTCCTCGTCCTCATCGTGTTCTTCATCGTCTTTGTGGTCTTCCTCGCCTGAGCAGGGAGAAATGATAGATAAAGAAGTGGAGGTTGAAGAAGAGGGAGATGGAAAAGTTCATTGTCTTTTGACAGGTTGCGTCACTCCTATGAAACGCAAGTCGCTTGACCAATAGTTCAGACTGAGTCATGCTATCTGACATAAGACAATGGGAAATGTTGGGCTGAGACGAGGGGTTGCCACAGCAACAGGACAATGGGACAGGTGGAGTGTTATTGAACGGTCTGGGACTTGAGGTCCAGCAGCCCAAGAAATGATAGTATTCTGCTGCCTAAAGCCTTGGAGAGCGTTTCTGGAGTCACCCTAGCAGATCTATTCTGTTCCTACAGACATTGATGAAATACCCCTAATGAAAAGGATATGCTATCGGAACACGCTTTGTATAGTATAAACAGAATACTTGTCATTCTGTTCTTTGTTACTTTAGAGAATAATTCATCTTAAACATTTAATCAAAAATGACTTATTTAATGGTTTGATTCTGCAAACCTACTTTTGTTTCTTGGTAGATTTTCTTTTACCCCTCATGTAGCTTATTGTTGATTGGTTGTAAGACGGGGTGTCATCAACTTTCTCTCTGACATGAGGGCCAACACAACAGACTGGAGTTTTCTTGAATTGTAatcatttcttttgatttttgtTCCTCATTATTCTAGTTTTATTAAAGAGAGACTTGAACAATTCTCCCTCAGTATCCTTCACGCCACACATGATTGGAAACTATTGTTGTTTTACTTTCTTTTTCTTTTGTTTCTTATTTGCCAAAAGGGTACTTTCAGTTTCAAAGAAATGTGACAAGACACCTGTGGTCTAAACTGTTTTATGACAGTACAGGATTAAAGGTGGTTTAAACTGAAGAGGACATTCCCTTCATAGCCCCAGTCATAAACACAATGTGACGAGTCAGACCCGAACAGTTTGTAACAGGTTACTTAATACTGTTATTGCAGATCTAACAGTTTAGATTGCCTGGTTTACCTGCCAGCAAGTCAGCTGGGGTCAGTCTGAATACTGTTGCCAatggtttgcatcccaaatggcactctatttcctatatagtgcactactttaaacagAGCCCAAgggccctggacaaaagtagtacATGGGTTGCTAAAAATGGGTTGCTATTTGGGACCCTAATTAACAGGTTGTATGTCATTGGTTATGACAGGGTTATGTAGAGCTGAAAGTACCCTAGTGAAGTCTTTCTCAACCAAACTTCCCTGCAACTTGTCCGTTTGGACCTCACTGCTTTATTGgggactgtcctcttcatctcctCTCACTGAGGACAGATGTTTATGTACAGGCTATTATTTAATGACCGACCAGAActtttttaataagaaaacacTCCTATTTCTTCCCTCTTTTTTTTGCCAAATGCCTTGACTTCTACAGTGTGTAAAGTGAAAATAGTGCTAATGTATTGGATAGAAGTGCATATTAAAAAAGAACAATGGGGAA
>XM_021561630.2
GTGGTGGACGTGGCGATGACGTCAGTATCCGGAAATGACCCGGATTCAAACTTTCATTCCCGGCTTGGTAAAAACATAGAACGATCTGTGAATTCTTGTGGATTTTTGCTAATAATACATTGAGAATGCCCGTGTGCATCATTGGACACGGATTGACGCCTCGCAGTTAGGAGTTGACATCAGGAGGTGTAGTGACTGTTTCCAAGGAGCACGGACCGGTCTATAGTACACTACCGATATCTTTCAGACGTCAGACCCTTCCTCCTTGGCGTGCCCAGTGCAGGCTGGTGATATACAGGCAGCAGGATGACGTGCAGGGATCGAACCAACGAGTTCCAGTCGGCCTGCAAATCCCTACAGAGCAGACAGAATGGTGTTCAGCACACCAAGCCAGCCCTCAGTGCTCTCAAGCAACGCAGTGACTTCACCCTCATGGCCAAGAGAATAGGGAAGGACTTgagtaatacatttgctaaactaGAGAAACTCACTATATTGGCTAAAAGAAGATCTCTATTTGATGACAAGGCAGTGGAGATTGAAGAGTTAACCTACATCATCAAGCAGGACATTAACAGCCTGAACAAGCAGATAGCCCAGCTGCAGGATCTGATTGGTTCACGTGGAGCACCCAGCGGCAGACACATCCAGACCCATTCCAACACCATCGTCATCTCCCTGCAGTCCAAACTGGCGTCTATGTCCAATGACTTCAAGTCGGTTCTAGAAGTAAGAACGGAGAACCTGAAGCAGCAGAAGAACAGGAGAGAACAGTTCTCTCAGCGCcacgtctcttctcctctccacgcCAACAACTTCAagaGTTCAGTGTTGATGCAGGATGAGTCAAGGAGTATGGGGGCTGAGGTCGCCATCAACATGGACAACCAGTCTAACCCTCTACAGCTCCAGCTCATTGATGAGCAGGACTCATACATCCAGAGCCGTGCAGACACCATGCAGAACATTGAGAGCACCATCGTAGAGCTGGGCTCTATCTTTCAGCAGCTGGCTCACATGgtgaaggagcaggaggagacagtacagagGATTGATGCTAACGTGGAGGACACTCAGCTCAACGTGGACATGGCTCACACGGAGATCCTCAAGTACTTCCAGTCTGTGTCCTCCAACCGCTGGCTCATGGTCAAGATCTTCCTCGTCCTCATCGTGTTCTTCATCGTCTTTGTGGTCTTCCTCGCCTGAGCAGGGAGAAATGATAGATAAAGAAGTGGAGGTTGAAGAAGAGGGAGATGGAAAAGTTCATTGTCTTTTGACAGGTTGCGTCACTCCTATGAAACGCAAGTCGCTTGACCAATAGTTCAGACTGAGTCATGCTATCTGACATAAGACAATGGGAAATGTTGGGCTGAGACGAGGGGTTGCCACAGCAACAGGACAATGGGACAGGTGGAGTGTTATTGAACGGTCTGGGACTTGAGGTCCAGCAGCCCAAGAAATGATAGTATTCTGCTGCCTAAAGCCTTGGAGAGCGTTTCTGGAGTCACCCTAGCAGATCTATTCTGTTCCTACAGACATTGATGAAATACCCCTAATGAAAAGGATATGCTATCGGAACACGCTTTGTATAGTATAAACAGAATACTTGTCATTCTGTTCTTTGTTACTTTAGAGAATAATTCATCTTAAACATTTAATCAAAAATGACTTATTTAATGGTTTGATTCTGCAAACCTACTTTTGTTTCTTGGTAGATTTTCTTTTACCCCTCATGTAGCTTATTGTTGATTGGTTGTAAGACGGGGTGTCATCAACTTTCTCTCTGACATGAGGGCCAACACAACAGACTGGAGTTTTCTTGAATTGTAatcatttcttttgatttttgtTCCTCATTATTCTAGTTTTATTAAAGAGAGACTTGAACAATTCTCCCTCAGTATCCTTCACGCCACACATGATTGGAAACTATTGTTGTTTTACTTTCTTTTTCTTTTGTTTCTTATTTGCCAAAAGGGTACTTTCAGTTTCAAAGAAATGTGACAAGACACCTGTGGTCTAAACTGTTTTATGACAGTACAGGATTAAAGGTGGTTTAAACTGAAGAGGACATTCCCTTCATAGCCCCAGTCATAAACACAATGTGACGAGTCAGACCCGAACAGTTTGTAACAGGTTACTTAATACTGTTATTGCAGATCTAACAGTTTAGATTGCCTGGTTTACCTGCCAGCAAGTCAGCTGGGGTCAGTCTGAATACTGTTGCCAatggtttgcatcccaaatggcactctatttcctatatagtgcactactttaaacagAGCCCAAgggccctggacaaaagtagtacATGGGTTGCTAAAAATGGGTTGCTATTTGGGACCCTAATTAACAGGTTGTATGTCATTGGTTATGACAGGGTTATGTAGAGCTGAAAGTACCCTAGTGAAGTCTTTCTCAACCAAACTTCCCTGCAACTTGTCCGTTTGGACCTCACTGCTTTATTGgggactgtcctcttcatctcctCTCACTGAGGACAGATGTTTATGTACAGGCTATTATTTAATGACCGACCAGAActtttttaataagaaaacacTCCTATTTCTTCCCTCTTTTTTTTGCCAAATGCCTTGACTTCTACAGTGTGTAAAGTGAAAATAGTGCTAATGTATTGGATAGAAGTGCATATTAAAAAAGAACAATGGGGAA

Function

NR:

description
syntaxin-5-like isoform X2

GO: NA

KEGG:

id description
K08490 STX5; syntaxin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561632.2 False 2516 mRNA 0.44 11 27026848 27036347
XM_021561630.2 True 2682 mRNA 0.44 11 27026848 27036380

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-115e12.6 LOC106604388 coding downstream 25356 26995966 ~ 27001492 (-)
kcnk4a LOC106604391 coding downstream 41719 26979968 ~ 26990318 (-)
LOC110489081 ctsw coding downstream 131664 26881974 ~ 26895184 (-)
eif1ad eif1ad coding downstream 144965 26873787 ~ 26881883 (-)
LOC110489085 LOC106604399 coding downstream 214827 26806115 ~ 26812021 (-)
vegfba vegfb coding upstream 8515 27044895 ~ 27057298 (-)
dnajc4 dnajc4 coding upstream 23101 27059481 ~ 27071377 (-)
LOC110489068 NA coding upstream 54347 27090727 ~ 27097242 (-)
si:ch211-168f7.5 LOC106604383 coding upstream 64302 27100682 ~ 27109098 (-)
ehd1a LOC106604384 coding upstream 82115 27118495 ~ 27134080 (-)
G1233590 NA non-coding downstream 1167 27024988 ~ 27025681 (-)
G1233616 NA non-coding downstream 15092 27010750 ~ 27011756 (-)
G1233613 NA non-coding downstream 33180 26993447 ~ 26993668 (-)
G1233558 NA non-coding downstream 50864 26975379 ~ 26975984 (-)
G1233557 NA non-coding downstream 52881 26973427 ~ 26973967 (-)
G1233569 NA non-coding upstream 51208 27087588 ~ 27088708 (-)
G1233644 NA non-coding upstream 72917 27109297 ~ 27109509 (-)
G1233649 NA non-coding upstream 78803 27115183 ~ 27115400 (-)
G1233650 NA non-coding upstream 79328 27115708 ~ 27116324 (-)
G1233612 NA other downstream 33664 26992793 ~ 26993184 (-)
G1232240 NA other downstream 861445 26103346 ~ 26165403 (-)
LOC110489477 LOC106604496 other downstream 2317541 24706395 ~ 24709307 (-)
G1234483 NA other upstream 1010198 28046578 ~ 28050952 (-)
med7 med7 other upstream 1096560 28132248 ~ 28134104 (-)
G1234578 NA other upstream 1177943 28214323 ~ 28215776 (-)
G1234595 NA other upstream 1204539 28240919 ~ 28242820 (-)
G1235679 NA other upstream 2183048 29219428 ~ 29220097 (-)

Expression

stx5a(LOC106604387) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

stx5a(LOC106604387) Expression in each Bioproject

Bar chart with 21 bars.
stx5a(LOC106604387) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network