XLOC_031122 (noxa1)


Basic Information

Item Value
gene id XLOC_031122
gene name noxa1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29142797 ~ 29152464 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060455
CGCTTAAATACACCTGTTCAGGAGCTGCTCTGATATTCACGAGCAATCACTTCTAGAAAGCAAATTGAGTTCTTGacttatttctgtttgttttgtgtgcaGTGAGCCATGCTGTATATCGAGTTGATCCGCCTGTGGGATGAGGCCGTAAAGGCAATAGACATTCGGGACTGGCAGGGAGCTCTCAGTAAACTCAACCAGATCACGGATCATAACTGTCGCACTATGTTTGTGGTTGCGTCCACTCACATCGCCCTGGGTCAAGTGGATTTGGCCATTAAGGCTCTCGACCGAGTAATCGCCAAGGACTCATGCCTTGCTGTGGGATTTTTTCAGCGGTCTGCCGTTCATATgatggcaaacagGCTTGAGGAGGCATTGTCTGATTGTATTTGGGCTCAGAAATACATGAGGGAAAACCCTGTCATTGACTACAAGCAGCTGGGTCTTCGCTATAAACTCTACAGCTGGCAGgtGCTTTATAATGCAGCAGCCGTTCACTCTAGACTGCAACAATGGGACAAAGCTAGGGACATTTTGCTGGCGGCCTCACAGGAGAGAGGAGCAGGCCGGAGCAACCTGATAGACACGGCCCTAGAGGCTATTTCTAGGAAGGATGTTTTGGAGCCTCTTCTGCTTCCTGAGGGTGAAGTGTTTCGTCCTAGGAAACTTGAGGTGGACCAGCTAAAACCGAGGGACTTCTTGGGTGAAGCAAAGGTGATTCAAATCTTCACGCTGTATTGCAGTTTTAATGCCTGTTCAAGTGCGGAATTTGAATACTGGataaatataaatgttcaaaACCAATTATTACAGACAATATACGATAAGAAAGGGAATGCACCAAGTAAAGGGGTCTCAATGTTTTGCCCTTCAGCTCTCTGCACTTTTGTCTTTTCCAATTACCTAAagatataagttattatatattatcttcctctttattttgttttctttttcgtcaaataagttttttatttGGTCGTTGAATAAACTTACAATATTCACAGATTCCAGGATTAGTTTTCTGAAATACCgtacatttacaaaaa
>TCONS_00060456
GCTGCTCTGATATTCACGAGCAATCACTTCTAGAAAGCAAATTGAGTTCTTGacttatttctgtttgttttgtgtgcaGTGAGCCATGCTGTATATCGAGTTGATCCGCCTGTGGGATGAGGCCGTAAAGGCAATAGACATTCGGGACTGGCAGGGAGCTCTCAGTAAACTCAACCAGATCACGGATCATAACTGTCGCACTATGTTTGTGGTTGCGTCCACTCACATCGCCCTGGGTCAAGTGGATTTGGCCATTAAGGCTCTCGACCGAGTAATCGCCAAGGACTCATGCCTTGCTGTGGGATTTTTTCAGCGGTCTGCCGTTCATATgatggcaaacagGCTTGAGGAGGCATTGTCTGATTGTATTTGGGCTCAGAAATACATGAGGGAAAACCCTGTCATTGACTACAAGCAGCTGGGTCTTCGCTATAAACTCTACAGCTGGCAGGTCAGAGCATAAGTGTACTTCTGTCAAGAGTATATGAGATAaaacatgatgttttttttttttttactctttatttaaatttttcatt
>TCONS_00060457
GAGCCCACGCTTAAATACACCTGTTCAGGAGCTGCTCTGATATTCACGAGCAATCACTTCTAGAAAGCAAATTGAGTTCTTGacttatttctgtttgttttgtgtgcaGTGAGCCATGCTGTATATCGAGTTGATCCGCCTGTGGGATGAGGCCGTAAAGGCAATAGACATTCGGGACTGGCAGGGAGCTCTCAGTAAACTCAACCAGATCACGGATCATAACTGTCGCACTATGTTTGTGGTTGCGTCCACTCACATCGCCCTGGGTCAAGTGGATTTGGCCATTAAGGCTCTCGACCGAGTAATCGCCAAGGACTCATGCCTTGCTGTGGGATTTTTTCAGCGGTCTGCCGTTCATATgatggcaaacaggtgagatttCTCTGTTTTTCCACTGTAGCTTTCTATGTGTGAGTCGGCTATCGTGCTTGATACAACACAAACATTGACCTCTTTTGTATAAAGCTGATGTTCTGGACAGCTGATTCACTTTCATCTGACACTGCCTCTTTGTTCTCTTGCTCTCTCACTGTCTCggtctctttctctttctgtctctgtCATTTTTTCTAATGCCAGGCTTGAGGAGGCATTGTCTGATTGTATTTGGGCTCAGAAATACATGAGGGAAAACCCTGTCATTGACTACAAGCAGCTGGGTCTTCGCTATAAACTCTACAGCTGGCAGGTCAGAGCATAAGTGTACTTCTGTCAAGAGTATATGAGATAaaacatgatgttttttttttttttactctttatttaaatttttcatt

Function

symbol description
noxa1 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within superoxide metabolic process. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytosol. Orthologous to human NOXA1 (NADPH oxidase activator 1).

GO:

id name namespace
GO:0042554 superoxide anion generation biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0043020 NADPH oxidase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016176 superoxide-generating NADPH oxidase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050913-32 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within superoxide metabolic process. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytosol. Orthologous to human NOXA1 (NADPH oxidase activator 1).

Ensembl:

ensembl_id ENSDARG00000056047

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060455 False 1052 mRNA 0.43 6 29142797 29152457
TCONS_00060456 False 539 processed_transcript 0.44 4 29149201 29152434
TCONS_00060457 True 776 lncRNA 0.44 3 29149201 29152464

Neighbor

gene id symbol gene type direction distance location
XLOC_031120 whrnb coding downstream 19963 28999474 ~ 29122834 (-)
XLOC_031121 NA coding downstream 140124 28999836 ~ 29002673 (-)
XLOC_031119 niban2b coding downstream 172738 28915389 ~ 28970059 (-)
XLOC_031118 npdc1b coding downstream 227667 28870372 ~ 28915130 (-)
XLOC_031117 traf2a coding downstream 375161 28755475 ~ 28767636 (-)
XLOC_031123 man1b1b coding upstream 29261 29181725 ~ 29195063 (-)
XLOC_031124 si:dkey-61l1.4 coding upstream 46828 29199292 ~ 29238889 (-)
XLOC_031125 BX571772.1 coding upstream 105552 29258016 ~ 29293066 (-)
XLOC_031126 cacna1ba coding upstream 143932 29296396 ~ 29488245 (-)
XLOC_031127 ehmt1a coding upstream 338640 29491104 ~ 29514729 (-)
XLOC_031115 NA non-coding downstream 582927 28555890 ~ 28559870 (-)
XLOC_031114 NA non-coding downstream 588890 28525209 ~ 28553907 (-)
XLOC_031113 NA non-coding downstream 651809 28488003 ~ 28490988 (-)
XLOC_031112 NA non-coding downstream 871530 28213591 ~ 28271267 (-)
XLOC_031133 NA non-coding upstream 437356 29589820 ~ 29593521 (-)
XLOC_031136 NA non-coding upstream 593855 29746319 ~ 29754339 (-)
XLOC_031139 NA non-coding upstream 744172 29896636 ~ 29901103 (-)
XLOC_031140 NA non-coding upstream 884022 30036486 ~ 30051558 (-)

Expression


Co-expression Network