LOC118938714


Basic Information

Item Value
gene id LOC118938714
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 29532105 ~ 29564001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943257.1
TGACGTCACGGTTCCCACACAACAGAGAGATGCGCACTGAGTTATAAGACGAGGCGGTTGTTCAGTGCGGTACATTTTTTTTTGAAGAAAAGCAGTAAGCAATAAAGATCCTGCCGAAtaggtttttttttaaagaggagTTGGAATTTCTGTTGAAAAGGCATATAATTTCTCATAAGGTGTCTCTGTTGTATAGCAGATGAATTTTGAGCAGCCTCCTCCGTACCAGGCCCCTGGTTACCCCCAGCAGGGTTACCCCCAGCAGGGTTACCCCCAGCAGGGATACCCCCAGCAGGGATACCCCCAGCAGGGATACCCCGTAAACATGGAGCAGCCTGGAGGATTCCCTCCTCAAAACCCAGGCTACCCTGCTGGCCCCGGGGGACCGCCTGGACCCTACCCCGGCCAGGGACAAGCAGGCCCCTACCAGGAGGGCTACCCTGGACAGCCCCAGTTTGGATGGCAAGGAGGACCACCCCCAGGACCCATGTATGGAGAGGCACCTAAAAAcacagtGTAcgtggtggaggagagaaggagagatgattCAGGAGACACGTGTCTGACTGCCTGTTGGACggctctctgctgctgctgcttgtgGGACATGCTCAcataacctctgacccctgacaTTTACACTTATCTGCTTTGACCCTCACCCTTTacctcctaacccttaacccacaGTTCCTCTCATCTGTAATAGAAAACAAGTACTGGgagaaatagaacactatgagtatctgggaaaccaggcctggtatttatagcggACTTTGAAAAGCCCTTTGATAAAGTACAACCAGAATGTATATGTAAATGCCTGGACCATTTTAATTTTGGAGAGTCTCTTATAAGATGgcttaaagttatgtatagtaaccccaggtgtaaaatagcaaataatggctacttctcggGAAGTATTAcattgtcaagaggagtaaaacaaggttgtccactatcggcatatctatttattacgGCCATCAGAATGTTCGctgttaaaatcagatccaacaataatatcaaggggctAGAAATCCAGggtttaaaaacaaaggtgtcattgcaCGCTGAtcattcatgttttcttttaaacaCGCAATTTGGATCCCTGCACAGCCTCCTAGAGGATGTAGAACCTTTTCTAACCTCTGGATTAAAACCAGAATGATGATAAATGcaccatattacgtattggatcactcaAAAAGACAACTTtcacattaccgtgtagtttaccaataaaatggtctgacgatGTAGTGGACATACTTGGTATACatatcccaaaagaaagaaatgatctcgatacaatatatatttatataaagtTAGCCAAATTAGATACCAttttgctaccatggaaaggacaACATCTGTTTATTTGTGGAAAAATTACCCTGATTGAATTTTTTTGTCATATCCCAGTTGACCTATTTACTTACTTATGGCCCTGCCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGCCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGCCTACACCTAACGACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGCCTACACCTAACGACTTGTTAATTCGCCTATTTACTTACTTATGGCCCTGTCTACACCTAACTACTTGTTAATTCACCTATTTACTTACTTATGGCCCTGTCTACACCTAACGACTTGTTAATTCACCTATTTGCTTACTTATGGCCCTGCCTACACCTAACGACTTGTTTATTcaattatatgagcaaaaaaaTTCCACCTTATTTTGAATGGCAAGCCGGAGAAAATTCTCTAGCAGatcaaaaaaaaaaaggtttaaaaatgttataatcttcgtaaatgatatcataaataggtcTGGTGGaattatgtcacacatgcagttaacaaaaaaatatggaaatatctgctctatccaaaattacaaccaactgattgcagcattgTGGAAAGGGGAGGTAAGGAACTTgactgtcggccctgcattacagaacaaaattggttaaagaaaattgtgataaataaaaagtataacagtttcatttaaggaccaacaaaatgacagctgcaccatcaaggtTGATAAATAGTTGGGAGGAGATTTTCAATGTACTGATTCCATGGTgcctggtttatgaactgatacacaaaacgacGCCAGATTCTAAACATAagagtttttcaatttaaattattatccACAATTCTTGCAACCAACATAATGtcatatatatgggggatacaaccatcccagctcttctgattttgctgtgaagagacagtcattagatcacttgttttggtactgccctgatgtagcttgtttttggtcggaGGTTCAGGAATGGCAAAAAagattgcaacatttacctggagctaactctgcaactagcactgctgggtgatttgaaaagtcatagtcaattgatcaataatgtaataatactcttagcaccatttttaaaatttaatttacaatctgtaggaACTGAGAAGATAAAGTTTCAGagcttttgtgaaacatcacagcacagtggaAATCTAtatatagatgggaggggttgagtgtagctgaaggctgggatgctaatgtaaaatatattgtCCATAAATTGTAGATAGTATGTATAAACAGGAAGTGGAAGCCTAAGTAtcgttgtccattagtttacttcaATTAGGGGAGTTGTGGTATGGTTAGGGGGAAATAAGAAAGTTATTAAAAAGTCCCTCATTTTatcctaacctctaacccctaaggTTTAACCCCTAATCCTGACCTACCTGTTACACTATCCCTCCATCTGGCCTTACTTCCTGTTAGTCCACCtcaatccttctctctccccctaactATCAGCCTTACCCCTTGCACTCCTGCTTTCCTTCCCAAACGTCCAGCCTGAACCCCTGTGCCTCCTGAACAATGGTAGCATTATATTGATAACCTCTATGTATCTATCCTTGTGCTCCTAAACCTGACCTAACCAATCTGTAGCAGTTTAGCTACAATACCTTCCCTAAATCTCaggcactgtactgtagatattgCTTCTTGTGGAACACAAATTCATTctcaaacaccacacacacacaatatgcacTCATATCTCAGGCGTTCTACTGTAGATGACACACATAcacgaacgaacacacacacacacacacaccatgctctctctctctctttatctctctctctctctctcctgggcaCTTTAACATCTTACCTCTGTAAGGTACTTCTCCTGCCTCCGTCCATCCTCCCAAACAAACCTCTAGTCATACCACCCCATATTCCCTAAACACTATACCACCCTAACACCGTATCTGTCATGGCTACCTAGACCATTGCAGGCCAGTAAGCTACAGTGGCCCTTGCCAACCCCCTGCCCCTGCTGTACCATGCTGAAGCTTGAACTGTCCTCTCCGTTATGTTTGCACAACAGCTACTGTGGTTTCCTGTTTGTCTTAGGATGAATCCTATGAGCTGGCATCGAATGCATTTTTTTAAAGACGATGACAATGAATATTTTAATGTTTGAGTACATGTACTATTGTTCAATGCTTGCAATGTTTTTTCCCTGTTCATTTCTAGATCCTGGATGAATATGATTTGATTGCTATGTTATTTTTAATATTCTCATTCCTTGAAGGAGAGAACatgaaacattaaaaaaagtGAATGTTTGTTATGTAGATGACTTTGCCTGACATGATAATCTTGCGTTAAGAATAAATTATTCCCAAAAAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943257.1 True 4262 mRNA 0.41 3 29532105 29564001

Neighbor

gene id symbol gene type direction distance location
LOC118938758 LOC106581179 coding downstream 465776 28948833 ~ 29066329 (-)
med7 med7 coding downstream 1398001 28132248 ~ 28134104 (-)
LOC110489096 LOC106604350 coding downstream 1407964 28099268 ~ 28124141 (-)
LOC118938755 NA coding downstream 1838303 27692738 ~ 27693802 (-)
tmsb2 NA coding downstream 1877789 27650986 ~ 27654316 (-)
LOC110489099 4ebp coding upstream 27989 29591990 ~ 29603450 (-)
LOC110487768 LOC106612132 coding upstream 43166 29607167 ~ 29697023 (-)
LOC110489104 LOC106604316 coding upstream 162403 29726404 ~ 29743983 (-)
LOC118938759 NA coding upstream 191023 29755024 ~ 29852118 (-)
LOC110489108 LOC106612138 coding upstream 405172 29969173 ~ 30041046 (-)
G1235822 LOC106604333 non-coding downstream 13722 29518137 ~ 29518383 (-)
G1235820 LOC105903358 non-coding downstream 18646 29512985 ~ 29513459 (-)
G1235817 LOC106604333 non-coding downstream 21104 29510513 ~ 29511001 (-)
G1235818 LOC106604330 non-coding downstream 22667 29509158 ~ 29509438 (-)
G1235819 LOC106604333 non-coding downstream 23164 29508702 ~ 29508941 (-)
G1235859 NA non-coding upstream 17040 29581041 ~ 29581387 (-)
G1235826 NA non-coding upstream 50609 29614610 ~ 29614905 (-)
G1235872 NA non-coding upstream 80316 29644317 ~ 29644847 (-)
G1235878 NA non-coding upstream 105348 29669349 ~ 29670023 (-)
G1235886 NA non-coding upstream 142519 29706520 ~ 29711712 (-)
G1235821 LOC106604330 other downstream 16819 29513886 ~ 29515286 (-)
G1235679 NA other downstream 312008 29219428 ~ 29220097 (-)
G1234595 NA other downstream 1289285 28240919 ~ 28242820 (-)
G1234578 NA other downstream 1316329 28214323 ~ 28215776 (-)
G1236274 NA other upstream 414409 29978410 ~ 29979361 (-)
LOC110487772 LOC106612141 other upstream 601753 30143782 ~ 30271667 (-)
G1236423 NA other upstream 734623 30298624 ~ 30303193 (-)
G1237075 LOC106612148 other upstream 1204946 30768947 ~ 30773746 (-)
LOC118938717 LOC105024420 other upstream 1352550 30912876 ~ 30992444 (-)

Expression


Co-expression Network