Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487777 |
| gene name | LOC106612147 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 30537003 ~ 30689002 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943291.1 | False | 4055 | mRNA | 0.46 | 17 | 30537003 | 30689002 |
| XM_036943292.1 | False | 3319 | mRNA | 0.45 | 17 | 30537736 | 30689002 |
| XM_036943293.1 | False | 3262 | mRNA | 0.45 | 16 | 30537736 | 30689002 |
| TU1410763 | False | 876 | lncRNA | 0.32 | 1 | 30688125 | 30689000 |
| TU1410764 | True | 396 | lncRNA | 0.32 | 1 | 30688605 | 30689000 |
30,500,000
30,520,000
30,540,000
30,560,000
30,580,000
30,600,000
30,620,000
30,640,000
30,640,000
30,660,000
30,680,000
30,700,000
30,720,000
30,740,000
30,760,000
30,780,000
30,800,000
NC_048578.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489482 | LOC106604286 | coding | upstream | 12554 | 30516376 ~ 30524449 (+) |
| LOC110489122 | LOC106604332 | coding | upstream | 62649 | 30465582 ~ 30474354 (+) |
| LOC110487769 | LOC106612144 | coding | upstream | 144970 | 30288746 ~ 30392033 (+) |
| LOC118938716 | NA | coding | upstream | 379621 | 30153553 ~ 30157382 (+) |
| LOC110489110 | LOC106604309 | coding | upstream | 483980 | 30048068 ~ 30053023 (+) |
| LOC110489118 | LOC106604281 | coding | downstream | 60299 | 30749301 ~ 30790922 (+) |
| LOC118938761 | thg1 | coding | downstream | 110169 | 30799171 ~ 30803145 (+) |
| LOC110504608 | NA | coding | downstream | 198875 | 30887877 ~ 30889558 (+) |
| rl26 | rl26 | coding | downstream | 304834 | 30993836 ~ 30996549 (+) |
| LOC118938718 | LOC106604294 | coding | downstream | 309151 | 30998153 ~ 31001849 (+) |
| G1236190 | NA | non-coding | upstream | 40357 | 30496439 ~ 30496646 (+) |
| G1236182 | NA | non-coding | upstream | 48591 | 30488208 ~ 30488412 (+) |
| G1236181 | NA | non-coding | upstream | 49357 | 30487046 ~ 30487646 (+) |
| G1236176 | NA | non-coding | upstream | 58741 | 30477975 ~ 30478262 (+) |
| G1236157 | NA | non-coding | upstream | 60087 | 30475291 ~ 30476916 (+) |
| G1236623 | NA | non-coding | downstream | 7951 | 30696953 ~ 30697192 (+) |
| G1236628 | NA | non-coding | downstream | 10944 | 30699946 ~ 30700153 (+) |
| G1236657 | NA | non-coding | downstream | 41551 | 30730553 ~ 30730934 (+) |
| G1236659 | NA | non-coding | downstream | 42564 | 30731566 ~ 30731977 (+) |
| G1236662 | NA | non-coding | downstream | 44812 | 30733814 ~ 30734498 (+) |
| G1235511 | NA | other | upstream | 887960 | 29646994 ~ 29649043 (+) |
| G1235231 | NA | other | upstream | 1475080 | 29060648 ~ 29061923 (+) |
| G1233120 | LOC106604383 | other | upstream | 3435067 | 27100698 ~ 27101936 (+) |
| G1233046 | NA | other | upstream | 3706901 | 26829691 ~ 26830102 (+) |
| LOC110489086 | LOC106604400 | other | upstream | 3763986 | 26759123 ~ 26801405 (+) |
| G1236717 | NA | other | downstream | 175049 | 30864051 ~ 30864487 (+) |
| G1236704 | LOC106612150 | other | downstream | 193947 | 30882949 ~ 30887151 (+) |
| pin4 | pin4 | other | downstream | 604226 | 31288367 ~ 31294783 (+) |
| zgc:66447 | LOC106604327 | other | downstream | 1701813 | 32379198 ~ 32397869 (+) |
| G1239015 | NA | other | downstream | 3089476 | 33773304 ~ 33799267 (+) |
| G1236253 | NA | non-coding | upstream | 31282 | 30656616 ~ 30656843 (+) |
