Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487786 |
| gene name | LOC105025636 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 33499100 ~ 33753408 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product, partial |
| id | name | namespace |
|---|---|---|
| GO:0035235 | ionotropic glutamate receptor signaling pathway | biological_process |
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005234 | extracellularly glutamate-gated ion channel activity | molecular_function |
| GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943366.1 | False | 4914 | mRNA | 0.45 | 16 | 33499100 | 33753402 |
| XM_036943367.1 | False | 4915 | mRNA | 0.46 | 16 | 33499100 | 33753403 |
| XM_036943368.1 | False | 4510 | mRNA | 0.47 | 14 | 33501895 | 33753408 |
| TU1414686 | False | 2677 | lncRNA | 0.39 | 3 | 33499107 | 33504168 |
| TU1414691 | True | 4207 | lncRNA | 0.39 | 2 | 33499107 | 33504168 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515721 | nlgn3 | coding | downstream | 157780 | 32890968 ~ 33341320 (-) |
| pcdh20 | LOC106604240 | coding | downstream | 629653 | 32859018 ~ 32869447 (-) |
| LOC110489159 | LOC106612194 | coding | downstream | 658006 | 32827309 ~ 32841094 (-) |
| LOC110489157 | LOC106604249 | coding | downstream | 732889 | 32758882 ~ 32766211 (-) |
| LOC110489155 | LOC106604251 | coding | downstream | 755484 | 32741502 ~ 32743616 (-) |
| LOC100305231 | kif3a | coding | upstream | 268127 | 34021535 ~ 34025654 (-) |
| sh3rf2 | LOC106604221 | coding | upstream | 273602 | 34027010 ~ 34071574 (-) |
| LOC110489168 | LOC106604222 | coding | upstream | 381207 | 34134615 ~ 34168443 (-) |
| n4wbp5 | n4wbp5 | coding | upstream | 502378 | 34255786 ~ 34263794 (-) |
| gnpi | gnpi | coding | upstream | 510439 | 34263847 ~ 34268820 (-) |
| G1239506 | NA | non-coding | downstream | 25591 | 33410599 ~ 33473509 (-) |
| G1239443 | NA | non-coding | downstream | 191512 | 33307104 ~ 33307588 (-) |
| G1239410 | NA | non-coding | downstream | 241784 | 33255602 ~ 33257316 (-) |
| G1239364 | NA | non-coding | downstream | 318487 | 33179580 ~ 33180613 (-) |
| G1240176 | NA | non-coding | upstream | 156244 | 33909652 ~ 33960808 (-) |
| G1240215 | NA | non-coding | upstream | 231825 | 33985233 ~ 33985487 (-) |
| G1240216 | NA | non-coding | upstream | 232081 | 33985489 ~ 33985704 (-) |
| G1240219 | NA | non-coding | upstream | 233468 | 33986876 ~ 33987185 (-) |
| G1240229 | NA | non-coding | upstream | 249669 | 34003077 ~ 34003346 (-) |
| G1239090 | ogt | other | downstream | 802698 | 32695876 ~ 32696402 (-) |
| LOC110489150 | LOC106604256 | other | downstream | 920153 | 32577176 ~ 32610818 (-) |
| G1238363 | LOC106612212 | other | downstream | 1069125 | 32427992 ~ 32429975 (-) |
| G1238347 | NA | other | downstream | 1098200 | 32400413 ~ 32400900 (-) |
| G1238344 | NA | other | downstream | 1099921 | 32396761 ~ 32399179 (-) |
| LOC110489172 | LOC106604229 | other | upstream | 535174 | 34288581 ~ 34292245 (-) |
| G1240399 | NA | other | upstream | 584415 | 34337823 ~ 34342891 (-) |
| G1240533 | NA | other | upstream | 888084 | 34641492 ~ 34642037 (-) |
| G1240534 | NA | other | upstream | 889727 | 34643135 ~ 34644152 (-) |
| G1240963 | NA | other | upstream | 1308515 | 35061923 ~ 35062319 (-) |
| G1239561 | NA | non-coding | upstream | 33339 | 33537507 ~ 33542581 (-) |
| G1239578 | NA | non-coding | upstream | 79198 | 33583366 ~ 33583805 (-) |
| G1239607 | NA | non-coding | upstream | 140436 | 33644604 ~ 33713090 (-) |
| G1239651 | NA | non-coding | upstream | 231046 | 33735214 ~ 33736132 (-) |
