Gene
RNA
| Item | Value |
|---|---|
| gene id | sh3rf2 |
| gene name | LOC106604221 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 34027010 ~ 34071574 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase SH3RF1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943369.1 | False | 3199 | mRNA | 0.54 | 9 | 34027010 | 34071574 |
| XM_036943370.1 | True | 2972 | mRNA | 0.55 | 8 | 34027011 | 34045768 |
34,010,000
34,020,000
34,030,000
34,040,000
34,050,000
34,060,000
34,070,000
34,080,000
34,090,000
34,100,000
NC_048578.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100305231 | kif3a | coding | downstream | 1356 | 34021535 ~ 34025654 (-) |
| LOC110487786 | LOC105025636 | coding | downstream | 273602 | 33499100 ~ 33753408 (-) |
| LOC110515721 | nlgn3 | coding | downstream | 685690 | 32890968 ~ 33341320 (-) |
| pcdh20 | LOC106604240 | coding | downstream | 1157563 | 32859018 ~ 32869447 (-) |
| LOC110489159 | LOC106612194 | coding | downstream | 1185916 | 32827309 ~ 32841094 (-) |
| LOC110489168 | LOC106604222 | coding | upstream | 63041 | 34134615 ~ 34168443 (-) |
| n4wbp5 | n4wbp5 | coding | upstream | 184212 | 34255786 ~ 34263794 (-) |
| gnpi | gnpi | coding | upstream | 192273 | 34263847 ~ 34268820 (-) |
| LOC110487784 | LOC106604228 | coding | upstream | 197735 | 34269309 ~ 34287066 (-) |
| LOC110489172 | LOC106604229 | coding | upstream | 217007 | 34288581 ~ 34292245 (-) |
| G1240229 | NA | non-coding | downstream | 23664 | 34003077 ~ 34003346 (-) |
| G1240219 | NA | non-coding | downstream | 39825 | 33986876 ~ 33987185 (-) |
| G1240216 | NA | non-coding | downstream | 41306 | 33985489 ~ 33985704 (-) |
| G1240215 | NA | non-coding | downstream | 41523 | 33985233 ~ 33985487 (-) |
| G1240176 | NA | non-coding | downstream | 66202 | 33909652 ~ 33960808 (-) |
| G1240292 | NA | non-coding | upstream | 58265 | 34129839 ~ 34132753 (-) |
| G1240355 | NA | non-coding | upstream | 142294 | 34213868 ~ 34214649 (-) |
| G1240362 | NA | non-coding | upstream | 149490 | 34221064 ~ 34222261 (-) |
| G1240363 | NA | non-coding | upstream | 151223 | 34222797 ~ 34223437 (-) |
| G1239090 | ogt | other | downstream | 1330608 | 32695876 ~ 32696402 (-) |
| LOC110489150 | LOC106604256 | other | downstream | 1448063 | 32577176 ~ 32610818 (-) |
| G1238363 | LOC106612212 | other | downstream | 1597035 | 32427992 ~ 32429975 (-) |
| G1238347 | NA | other | downstream | 1626110 | 32400413 ~ 32400900 (-) |
| G1238344 | NA | other | downstream | 1627831 | 32396761 ~ 32399179 (-) |
| G1240399 | NA | other | upstream | 266249 | 34337823 ~ 34342891 (-) |
| G1240533 | NA | other | upstream | 569918 | 34641492 ~ 34642037 (-) |
| G1240534 | NA | other | upstream | 571561 | 34643135 ~ 34644152 (-) |
| G1240963 | NA | other | upstream | 990349 | 35061923 ~ 35062319 (-) |
