LOC110489168 (LOC106604222)


Basic Information

Item Value
gene id LOC110489168
gene name LOC106604222
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34134615 ~ 34168443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943371.1
GCCGAACGGTACCTTTCCATGGTGTTGAAGTGACGCCCACTCACAGTCCAATCACTGTACCATAGCGCATCACAACCTCCCAGCTTGAAATAGCTGGTGATAGACAATGAAGACATTATTCATCAGCATAGATAAATCCTGGGAAGCAACAAAAACGGTTAGTGGGGTTATTTCGTTTTTGCTAATTACATCATACACAGTTTTTAATTAGTCACCTGATATGTTTCAGCATATGGAAATCCCCAAATTAAATTCAAACTCAAATGTTATTATAGCCtattaggctactttgaagaatgttaATATATTTTCTATGGAATGTCATTCAGAATGTAGGCTATTCTACGCTACGTCGTACGTTTTCAAACGTAATTTTCCTTTAAGATGATGATGTAAGACGTTACTCCCCATTATGTTTTTCCACGCACCGCTGGAAAAACATCATCGTAACCGTTTTCACTTCGGTGCCAGCCTGGCCGTTATTTCTGCTCTCTTCTCTGCACAGCAGTTTGCAGACGTAGAGATGGGAGCGCGCTGCACCGGCGTCCGGATTCTATCTTCACTTTCAGAAAAGGACAGCACGCGCACGGCAATTTCTTTCTCTGTGGACAGCGAACGTGCCATTGATTCAGGCAGATAAAGTTACACTGGACTGTTAATAAAAAACAAGGACTGGAGCTTGCCTTGCAGAATCAAAGAAGTTGGACATTTTTATCCAGAACGGACTGAAGTGCAGAGGTGATCAATTATATTTTCGATCGATTATGGAATAATGGTGATTTCACGATGATTTCACTGTAGGATTATATTAATGGACTCAAAGCAATGGATGTGTGTAAAAATATGCGTGCACTGCATGTGGGGACCGATTTAATTCAACAGAAGACATGCACATTCCATCCCATATAGAAAACTTTTTGGGAACATCTGCGCGCCACACCTTGACCGGGATTTGGTTTTATGCATGAACTAAAAATGGCACTGAGTGAGAATTGTAAAACCCAGCCAGCTAAAGAAACAGGGTCGGTGCAAAACCCGCCGTCTGATGTTATTGAATTAAACGTGGGAGGTCAGGTATACTATACTCGTCTCCATACTTTAACAAGCATCCCCAATTCCTTACTGGGACGGTTATTCTCCACCAAGAAGGGGTCCTCGTCGAACGATTTGGCTCGGGACCTCAGGGGACGTTATTTTATCGACAGAGATGGTTTTCTGTTCAGATATGTCTTGGATTATTTGAGAGATAAACAGGTCGTCCTACCGGATCACTTCCCGGAGAAAGGGAGGTTAAAACGGGAAGCAGAATACTTTGAACTGCCCAAACTGGTCAAACTGTTGGCGTCCGAGGAATCTAACATTTTTCAGGACGACCCGTTTCATAGTGATTTCGACAACGCGTCGCTAAGCAGCGACCAGCGGATATATTCCTCATACTCTCTGGACGGGAGATATGGATACTTAACCGTCGGTTTCAAAGGCACGTGCGCGGCACCGGGGGGCAAAAACAGTCAGATTAACCCCAAATCCAAAAAAGTAGTACCCAGAATCTTCATCAGCGGAAGGATCGGCCTCGCCAAAGAGGTGTTTGGAAACACCCTGAATGAGAGCCTAGACGCAGACAGGGCTGCGGACAGGTACACCTCCCGGTTCTTCCTCCGGTTCTGTCACCTGGAGCGGGCCTTTGACATGCTGTCGGAGAGCGGGTTCCACATCGTTGCCTGTAACTCGTTGCTCACCGCCTCTTCCATCAGCCATTACGCACCTGAGAAAGTATGGTCCAATTTCACGCAGTACGTCTTCTACCGTGGCCCATCCAGGTGGTCTTCGTCCCACTGCGACTGCTGCTGCAAGAGCCACAAGAGTgagcgcgagggagagagtggCACATCTTTGAACGAGCTCTCTACTTCCTGCTCCGAGACCCAATCAGAAGCCAGTTCCCCTCAGGGCACTGTCATCTGTGGTTCCGTCAGCCGTCAGCCTCACCCCGTCGCCCAGACCCTGGACCGGCCACTGAAGAAAGGGCCCGTTCAGCTGCTCCAGCCGTCGGAGGTGAGGAGGAAGACGGACCTGCTCCGTGTGAGGACCATGGGGATCAGGGAGCACCGGGACGCTGCAGCCAAGAGGAAAGCCAACAAGGAGAAGTTAACACCGGAGCAGGAGCTGGAGAGATGCATCCAGGACTTCCACAGGATCAGGATTCCTGAACGCTTCCCGGAGAGAAAGTACATGTGGCAACAAGAACTGCTGAGGAAGTACCGTCtctaa
>TU1415579
AAGGGGTCCTCGTCGAACGATTTGGCTCGGGACCTCAGGGGACGTTATTTTATCGACAGAGATGGTTTTCTGTTCAGATATGTCTTGGATTATTTGAGAGATAAACAGGTCGTCCTACCGGATCACTTCCCGGAGAAAGGGAGGTTAAAACGGGAAGCAGAATACTTTGAACTGCCCAAACTGGTCAAACTGTTGGCGTCCGAGGAATCTAACATTTTTCAGGACGACCCGTTTCATAGTGATTTCGACAACGCGTCGCTAAGCAGCGACCAGCGGATATATTCCTCATACTCTCTGGACGGGAGATATGGATACTTAACCGTCGGTTTCAAAGGCACGTGCGCGGCACCGGGGGGCAAAAACAGTCAGATTAACCCCAAATCCAAAAAAGTAGTACCCAGAATCTTCATCAGCGGAAGGATCGGCCTCGCCAAAGAGGTGTTTGGAAACACCCTGAATGAGAGCCTAGACGCAGACAGGGCTGCGGACAGGTACACCTCCCGGTTCTTCCTCCGGTTCTGTCACCTGGAGCGGGCCTTTGACATGCTGTCGGAGAGCGGGTTCCACATCGTTGCCTGTAACTCGTTGCTCACCGCCTCTTCCATCAGCCATTACGCACCTGAGAAAGTATGGTCCAATTTCACGCAGTGGCCCATCCAGGTGGTCTTCGTCCCACTGCGACTGCTGCTGCAAGAGCCACAAGAGTgagcgcgagggagagagtggCACATCTTTGAACGAGCTCTCTACTTCCTGCTCCGAGACCCAATCAGAAGCCAGTTCCCCTCAGGGCACTGTCATCTGTGGTTCCGTCAGCCGTCAGCCTCACCCCGTCGCCCAGACCCTGGACCGGCCACTGAAGAAAGGGCCCGTTCAGCTGCTCCAGCCGTCGGAGGTGAGGAGGAAGACGGACCTGCTCCGTGTGAGGACCATGGGGATCAGGGAGCACCGGGACGCTGCAGCCAAGAGGAAAGCCAACAAGGAGAAGTTAACACCGGAGCAGGAGCTGGAGAGATGCATCCAGGACTTCCACAGGATCAGGATTCCTGAACGCTTCCCGGAGAGAAAGTACATGTGGCAACAAGAACTGCTGAGGAAGTACCG

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943371.1 False 2271 mRNA 0.48 3 34134615 34168443
TU1415579 True 1104 lncRNA 0.55 3 34134622 34167297
Loading

Neighbor

gene id symbol gene type direction distance location
sh3rf2 LOC106604221 coding downstream 63041 34027010 ~ 34071574 (-)
LOC100305231 kif3a coding downstream 108961 34021535 ~ 34025654 (-)
LOC110487786 LOC105025636 coding downstream 381207 33499100 ~ 33753408 (-)
LOC110515721 nlgn3 coding downstream 793295 32890968 ~ 33341320 (-)
pcdh20 LOC106604240 coding downstream 1265168 32859018 ~ 32869447 (-)
n4wbp5 n4wbp5 coding upstream 87343 34255786 ~ 34263794 (-)
gnpi gnpi coding upstream 95404 34263847 ~ 34268820 (-)
LOC110487784 LOC106604228 coding upstream 100866 34269309 ~ 34287066 (-)
LOC110489172 LOC106604229 coding upstream 120138 34288581 ~ 34292245 (-)
LOC110489166 LOC106604233 coding upstream 125750 34294193 ~ 34297670 (-)
G1240292 NA non-coding downstream 1862 34129839 ~ 34132753 (-)
G1240229 NA non-coding downstream 131269 34003077 ~ 34003346 (-)
G1240219 NA non-coding downstream 147430 33986876 ~ 33987185 (-)
G1240216 NA non-coding downstream 148911 33985489 ~ 33985704 (-)
G1240215 NA non-coding downstream 149128 33985233 ~ 33985487 (-)
G1240355 NA non-coding upstream 45425 34213868 ~ 34214649 (-)
G1240362 NA non-coding upstream 52621 34221064 ~ 34222261 (-)
G1240363 NA non-coding upstream 54354 34222797 ~ 34223437 (-)
G1240368 NA non-coding upstream 82103 34250546 ~ 34250857 (-)
G1240379 NA non-coding upstream 154277 34322720 ~ 34325156 (-)
G1239090 ogt other downstream 1438213 32695876 ~ 32696402 (-)
LOC110489150 LOC106604256 other downstream 1555668 32577176 ~ 32610818 (-)
G1238363 LOC106612212 other downstream 1704640 32427992 ~ 32429975 (-)
G1238347 NA other downstream 1733715 32400413 ~ 32400900 (-)
G1238344 NA other downstream 1735436 32396761 ~ 32399179 (-)
G1240399 NA other upstream 169380 34337823 ~ 34342891 (-)
G1240533 NA other upstream 473049 34641492 ~ 34642037 (-)
G1240534 NA other upstream 474692 34643135 ~ 34644152 (-)
G1240963 NA other upstream 893480 35061923 ~ 35062319 (-)

Expression

LOC110489168(LOC106604222) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110489168(LOC106604222) Expression in each Bioproject

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LOC110489168(LOC106604222) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network