LOC110489166 (LOC106604233)


Basic Information

Item Value
gene id LOC110489166
gene name LOC106604233
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34294193 ~ 34297670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561775.2
CCTGGGTTGATTGCGCACACCTGTTGAACTTCAGTGACATGTGCATAGGTTTATTGACCCGAGGGAGTTCTCCAAGTTTTGACGGACTGATTGACAATGGAGACTCCTCTCCACTTGACTATTGTTCTTAATTACCCGACCTCTATTTTACTACTCTTGATCGGCGGCTTTTCTCTTGGATCGTCCCCGACCACGTCAAATCTAGCTGACGAGTTTGGCGATTTTACTTTGTACCAACATGGCAATATCTTGTCACCCCTTCTGAAGGCGCTGACAGCACAGGGAGTTCCATGGCAAGACACGGCCCCAAGAATGAAACCTGATTCGAGATATGTTCGATACATGAAAAGACTGTACAGGATGTCTTCGAGACATGAGAGGAGTTTGGAAGGGAACAACCACCTGTACAACACAGTTCGACTTATAACCCCGCGGGGTGAGTGCCTGGAGCAAAGCAAAGAGTTCTTCATGCAACACCTCTCCTACAATCTGGACCGTGTCAGAGTCAAGGAGCAGCTCCTAAAGTCTGTCCTGCTGTTCTCCTTCGACCAAGAGCAGGCCTTGTCCATGACTACCCAATGTTACCTAGATGTGAAAGAGCAGGCTGCCCAGGATCAGTGTCTTCTCTGCCCCAGCACCCATCACTCAGTCAACTTCCTGTTCCACACGGACCGCAGGAGGAAGTGGGTTGAGGTGGACCTCACGGCGTTCCTCCGACCTCTCATCCAGTCCCACAAGAAGGACATCCATTTGCTGAGCAACCTGACGTGTGTGGAGGGCAGAGGCAGGGAGGCTAaggctggaggagagaagaggagcggtAGGGGCCCCGTGGAGCTCCACCTAAGGTCTCCGTCCTTGCTCCTGTACCTCAATGACACCAGCGAGCTGGCACACCAAAGATGGCTGCCCACCAGGTCACAAGGTCATCCGAGGTCAGCCAATGAGATGGACACCTTTGAGAGCCTGGCGGAGTTCAAACCAGAGCAAAGGATCAGCCGGAGcaagaggagaagactgaggagAGAATCTCCAGATCTGTTGATGAACAACGCACGAGGCAAAACGAGCCCGAAGACCATCCTCCCGGACCTCCTCCCGAGTTCTGACTTCCCTACGAGCGACTGTGCTTTGTACGACTTCAGAGTGAGCTTCAGTGAGCTCAAACTGAGCCATTGGATCATTTTCCCCCACAGGTACAACCCCAGGTACTGTAAAGGCACCTGTCCCAGGGCTGTGGGGTTCATCTACGGCTCCCCCAGACACACCTTCTTCCAGAACATGATCTACCACATACTGGACTCCTCCGTGCCACAGCCTTCCTGTGTTCCCTTGGAGTACATCCCCCTGAGTGTTTTAACCCTTGAAGGTGACTCCATTGCCTACAAGGAGTTAGATGAAATGATCGCTACGAGGTGCACATGTCGCTAAAGGCCCACCTCCAGGGTCCGGCTCAATTCCATTTGAACTTGGTGTAAAAACTGAACAATctcaactgaaattccaattgtTCTCTATActtttcaatgtaaaaaaaaaaatcctatcgCTCGGGCTGATCTTCTTCGTTCTGgaaattgactgaattgaaatggaattgacccctaCCTCACTGTTTTACCAGCCTCAACACTTTGACTGTTAACCTACCTTCTGCATCAACTGCCGTTAGACTTATTCCATCCTCCTCAAGCGCTTGACTTTAGCAACTTTCGCCTATAGTAACATCCTGGTCTGGGTACTTCATGTCAAGTCATCAGTGTCTTTGTCAAAACATTAGTACGTGGAGTTagagattttttttatatctaGAACAGATGCAGAAAATATGGCATTGATTTCCTTTGTTTACATGTTTATGTGATTGGCAGGAATGTTGTGAAGATGTCCTATCCCTGCACTTACTGTctggtttgtttgttttgtttgtgtttttgcaTTGCGTTGACACATGAGAACATGGATTGATTTTTAAGTTATTatttttgtttaatttattttggGTGTTCTGCCATCTTTAGTCTCTTCTTTCACACTAACTGGTACATCTGTTCtggacaaaatatt

Function

NR:

description
growth/differentiation factor 9-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561775.2 True 2067 mRNA 0.48 3 34294193 34297670
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489172 LOC106604229 coding downstream 1948 34288581 ~ 34292245 (-)
LOC110487784 LOC106604228 coding downstream 7127 34269309 ~ 34287066 (-)
gnpi gnpi coding downstream 25373 34263847 ~ 34268820 (-)
n4wbp5 n4wbp5 coding downstream 30399 34255786 ~ 34263794 (-)
LOC110489168 LOC106604222 coding downstream 125750 34134615 ~ 34168443 (-)
LOC118938726 NA coding upstream 144670 34441064 ~ 34443131 (-)
LOC110487787 sfxn1 coding upstream 288996 34586666 ~ 34618931 (-)
LOC110489177 pp2aa coding upstream 324960 34622630 ~ 34627670 (-)
ccdc69 LOC106604205 coding upstream 585721 34883391 ~ 34904800 (-)
LOC118938728 NA coding upstream 600006 34897676 ~ 34900540 (-)
G1240368 NA non-coding downstream 43336 34250546 ~ 34250857 (-)
G1240363 NA non-coding downstream 70756 34222797 ~ 34223437 (-)
G1240362 NA non-coding downstream 71932 34221064 ~ 34222261 (-)
G1240355 NA non-coding downstream 79544 34213868 ~ 34214649 (-)
G1240379 NA non-coding upstream 25050 34322720 ~ 34325156 (-)
G1240395 NA non-coding upstream 32080 34329750 ~ 34330550 (-)
G1240402 NA non-coding upstream 53297 34350967 ~ 34351178 (-)
G1240406 NA non-coding upstream 61909 34359579 ~ 34359844 (-)
G1239090 ogt other downstream 1597791 32695876 ~ 32696402 (-)
LOC110489150 LOC106604256 other downstream 1715246 32577176 ~ 32610818 (-)
G1238363 LOC106612212 other downstream 1864218 32427992 ~ 32429975 (-)
G1238347 NA other downstream 1893293 32400413 ~ 32400900 (-)
G1240399 NA other upstream 40153 34337823 ~ 34342891 (-)
G1240533 NA other upstream 343822 34641492 ~ 34642037 (-)
G1240534 NA other upstream 345465 34643135 ~ 34644152 (-)
G1240963 NA other upstream 764253 35061923 ~ 35062319 (-)
G1240953 NA other upstream 810158 35107828 ~ 35125496 (-)

Expression

LOC110489166(LOC106604233) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110489166(LOC106604233) Expression in each Bioproject

Bar chart with 16 bars.
LOC110489166(LOC106604233) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network