Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118938726 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 34441064 ~ 34443131 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| amphiphysin isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035988.1 | False | 378 | mRNA | 0.38 | 3 | 34442340 | 34442957 |
| TU1415753 | True | 430 | lncRNA | 0.38 | 4 | 34441064 | 34443131 |
34,440,000
34,440,400
34,440,800
34,441,200
34,441,600
34,442,000
34,442,400
34,442,800
34,443,200
34,443,600
34,444,000
34,444,000
34,444,400
34,444,800
34,445,200
34,445,600
34,446,000
34,446,400
34,446,800
34,447,200
34,447,600
34,448,000
NC_048578.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489166 | LOC106604233 | coding | downstream | 144670 | 34294193 ~ 34297670 (-) |
| LOC110489172 | LOC106604229 | coding | downstream | 150095 | 34288581 ~ 34292245 (-) |
| LOC110487784 | LOC106604228 | coding | downstream | 155274 | 34269309 ~ 34287066 (-) |
| gnpi | gnpi | coding | downstream | 173520 | 34263847 ~ 34268820 (-) |
| n4wbp5 | n4wbp5 | coding | downstream | 178546 | 34255786 ~ 34263794 (-) |
| LOC110487787 | sfxn1 | coding | upstream | 143709 | 34586666 ~ 34618931 (-) |
| LOC110489177 | pp2aa | coding | upstream | 179673 | 34622630 ~ 34627670 (-) |
| ccdc69 | LOC106604205 | coding | upstream | 440434 | 34883391 ~ 34904800 (-) |
| LOC118938728 | NA | coding | upstream | 454719 | 34897676 ~ 34900540 (-) |
| gm2a | sap3 | coding | upstream | 471103 | 34914060 ~ 34921098 (-) |
| G1240406 | NA | non-coding | downstream | 82496 | 34359579 ~ 34359844 (-) |
| G1240402 | NA | non-coding | downstream | 91162 | 34350967 ~ 34351178 (-) |
| G1240395 | NA | non-coding | downstream | 111790 | 34329750 ~ 34330550 (-) |
| G1240379 | NA | non-coding | downstream | 117184 | 34322720 ~ 34325156 (-) |
| G1240368 | NA | non-coding | downstream | 191483 | 34250546 ~ 34250857 (-) |
| G1240445 | NA | non-coding | upstream | 4478 | 34447435 ~ 34448048 (-) |
| G1240451 | NA | non-coding | upstream | 41322 | 34484279 ~ 34486122 (-) |
| G1240486 | NA | non-coding | upstream | 55091 | 34498048 ~ 34498784 (-) |
| G1240487 | NA | non-coding | upstream | 56027 | 34498984 ~ 34499326 (-) |
| G1240490 | NA | non-coding | upstream | 64883 | 34507840 ~ 34508292 (-) |
| G1240399 | NA | other | downstream | 99449 | 34337823 ~ 34342891 (-) |
| G1239090 | ogt | other | downstream | 1745938 | 32695876 ~ 32696402 (-) |
| LOC110489150 | LOC106604256 | other | downstream | 1863393 | 32577176 ~ 32610818 (-) |
| G1238363 | LOC106612212 | other | downstream | 2012365 | 32427992 ~ 32429975 (-) |
| G1240533 | NA | other | upstream | 198535 | 34641492 ~ 34642037 (-) |
| G1240534 | NA | other | upstream | 200178 | 34643135 ~ 34644152 (-) |
| G1240963 | NA | other | upstream | 618966 | 35061923 ~ 35062319 (-) |
| G1240953 | NA | other | upstream | 664871 | 35107828 ~ 35125496 (-) |
| G1241697 | NA | other | upstream | 1074820 | 35517777 ~ 35519330 (-) |
