LOC110489177 (pp2aa)


Basic Information

Item Value
gene id LOC110489177
gene name pp2aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34622630 ~ 34627670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561790.2
AGTGTAATAAAACTCTCTCATTGATTGTTGCTCGGTGAAGAAGCAGGGTTGGGTCCTCGGAATTTCATACAGAGCCAGTTTTCTGCAACTGCGGCTGTACCACGCATTTCTTTAGCTATTTCAGATAAACAGGATATCGAGGCGCATGCAGCGCTTATTTTTTAACGAGTAGCTAGCTAGTAAGGGGGGGTTGAACCAATTTAAAGCAGGTGTCTATGACCTAGCTAGCTCGTACATTCATTTTCGACGAAAGCAAAAAGAGTGCGAATGACGAGAACGCATTAACTAAACTAGTTTTCAATAGGTAACCTAACTAGGGAGTTTGCTCGCTGAAATATAACCAGACATGGACGACAAGTCATTCACTAAGGAATTGGATGGGTGGATTGAGCAACTCGGCGAATGCAAACAGCTCTCGGAAAATCAAGTCAAAGCCCTTTGCGAGAAGGCCAAAGAGATTCTGACGAAGGAGTCTAATGTGCAGGAGGTGAGATGTCCGGTCACCGTGTGCGGAGATGTCCACGGACAGTTCCATGACTTGGTGGAGCTGTTTAAAATCGGAGGGAAGTCTCCTGACACCAACTACCTCTTCATGGGAGACTATGTGGACAGGGGCTACTATTCTGTAGAGACAGTCAGTCTCCTAGTATCTCTCAAGGTGAGGTACCGTGAACGAATCACCATCCTCCGAGGGAACCACGAGAGCAGACAGATTACCCAGGTGTACGGCTTCTACGACGAGTGTTTAAGGAAATACGGAAACGCCAACGTCTGGAAGTACTTCACAGACTTATTTGACTACCTGCCCCTCACTGCACTGGTAGATAACCAGATCTTCTGTCTCCACGGTGGACTGTCCCCTTCAATAGACACACTGGAACACATCAGAGCGCTGGATCGCTTACAGGAAGTTCCTCATGAGGGTCCGATGTGTGACCTGCTGTGGTCAGACCCTGATGACCGTGGCGGCTGGGGCATCTCTCCCCGCGGTGCCGGCTACACCTTTGGACAGGACATCTCAGAGACTTTCAACCATGCTAACGGACTCACCCTGGTCTCCAGAGCTCACCAGCTGGTCATGGAGGGTTATAACTGGTGCCATGACCGTAACGTGGTGACTATCTTCAGTGCACCCAATTACTGCTATCGCTGTGGAAACCAGGCCGCCATCATGGAGCTGGATGACACGCTCAAGTACTCCTTCCTTCAGTTCGACCCCGCCCCTCGCAGAGGTGAACCCCATGTGACCCGCCGCACTCCTGACTACTTCCTGTAAAAGATCCCAATGCCTGTGAAGTATTGCTCTAGATTCTTCTTAGTGAAGAAGTGGGAGAAGATGCGGGAGAAGGGAGCATCGGTATAGAGTTGTGACAAAGTAAGCATCCATCAATCCATGGACCAAAATGTGTGCCATAATTTCACAAAATGGAAAAAAATGTCACAGTCATCTTTAAAGAAGACCACACAACCGACACCCACCACAGTCCATGGAACcagttccttctctctctgtgcatgATGTTATATTTATCTCTGAAAATGATTCTTAATTGTAAAGATTACAGTGTACTATATAtagtaatagggtgccattttggaagcaGACAGTCTCATAGTACCTGCTGGTTTTGTCAGGAAAAAGATCTGCTTTGAATGAATTAATCTGCTGAGATTAAGGCTTAAATGTAACCCTTGTGGTAGGAACATAATTCTAGTATAGAAACGTTTTGGTGAACCTAACTCGGCATGGCCTCAAACTGGAAGGTTGCAGTAAACAAACATGTTATGTTGTGAACATTTTTCTAACAGAAATTCAAtggctttttttgtgtgtgaatttTAAATCATTGTTTTCAGACTTGGTTGAGCGCTGGATGGAATTGAATTCTTCTTTCTCTTTGCACTTTTGTATTTAATGTTTATCATGACACTGACAAACTACAGCATTCTGTTTTACGctgcgttcagaaagtattcagaccccttgactttttccacattttgttacattacagccttattctaaaatggattaaatagattttattcctca

Function

NR:

description
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561790.2 True 2053 mRNA 0.45 7 34622630 34627670
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487787 sfxn1 coding downstream 3699 34586666 ~ 34618931 (-)
LOC118938726 NA coding downstream 179673 34441064 ~ 34443131 (-)
LOC110489166 LOC106604233 coding downstream 324960 34294193 ~ 34297670 (-)
LOC110489172 LOC106604229 coding downstream 330385 34288581 ~ 34292245 (-)
LOC110487784 LOC106604228 coding downstream 335564 34269309 ~ 34287066 (-)
ccdc69 LOC106604205 coding upstream 255721 34883391 ~ 34904800 (-)
LOC118938728 NA coding upstream 270006 34897676 ~ 34900540 (-)
gm2a sap3 coding upstream 286390 34914060 ~ 34921098 (-)
LOC118938729 NA coding upstream 397504 35025174 ~ 35028163 (-)
LOC110489216 LOC106604190 coding upstream 414421 35042091 ~ 35082780 (-)
G1240515 NA non-coding downstream 59086 34562996 ~ 34563544 (-)
G1240508 NA non-coding downstream 74542 34547859 ~ 34548088 (-)
G1240505 NA non-coding downstream 85914 34536349 ~ 34536716 (-)
G1240503 NA non-coding downstream 87224 34535196 ~ 34535406 (-)
G1240491 NA non-coding downstream 112431 34509815 ~ 34510199 (-)
G1240533 NA non-coding upstream 13832 34641492 ~ 34642037 (-)
G1240535 NA non-coding upstream 17230 34644900 ~ 34645191 (-)
G1240537 NA non-coding upstream 22126 34649796 ~ 34650466 (-)
G1240539 LOC106604211 non-coding upstream 25891 34653561 ~ 34653889 (-)
G1240541 LOC106604211 non-coding upstream 26779 34654449 ~ 34655184 (-)
G1240399 NA other downstream 279739 34337823 ~ 34342891 (-)
G1239090 ogt other downstream 1926228 32695876 ~ 32696402 (-)
LOC110489150 LOC106604256 other downstream 2043683 32577176 ~ 32610818 (-)
G1238363 LOC106612212 other downstream 2192655 32427992 ~ 32429975 (-)
G1240534 NA other upstream 15465 34643135 ~ 34644152 (-)
G1240963 NA other upstream 434253 35061923 ~ 35062319 (-)
G1240953 NA other upstream 480158 35107828 ~ 35125496 (-)
G1241697 NA other upstream 890107 35517777 ~ 35519330 (-)

Expression

LOC110489177(pp2aa) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110489177(pp2aa) Expression in each Bioproject

Bar chart with 21 bars.
LOC110489177(pp2aa) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network