LOC118938728


Basic Information

Item Value
gene id LOC118938728
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34897676 ~ 34900540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035990.1
GGTGTGGTTTCCTGTAGTGTTGTAGGTCAACAACCATCAAGCTGGAGGAGGTGAGTGGTGTGGTTTCCTGTAGTGTTGTAGAAGGTCAACAGCCATCAAGATGGAGTGGGTGAGTGGTGTGGTTTCCTGTAGTGTTGTAGAAGGTCAACAGCCATCAAGATGGAGTGGGTGAGTGGTGTGGTTTCCTGTAGTGTTGTAGAAGGTCAACAGCCATCAAGATGGAGTGGGTGAGTGGTGTGGTTTCCTGTAGTGTTGTAAACTGACACTGACTCCTCTCCTACTGCTTGTCAGGTTTTCTTTATTACATCTGAGCGTTTTACACATCAATCTGCTTCTTGATGCATTATAAAATCTAGGCGCCCATACTGACGTGTCCTCTCTTTATTATTGGGCCCACTAATAACCAGTATATAATAACGGTCCTCCTGTATAGCTCCGTTGGCTTTGGTATGGTGCTTGCAACTCCAGGATTGTGGGTTGGATTCATATTTGGGGACTCTGTTTTGTTAAATTCAGTCTGGTATGAGAAAGGTATTCACAGTCTGCGGAAAGCTGAGTATCTTTGCTATTGAGCTGTGCCTTAAAATCATTGGTGTGATTTGCTAATATATATGAGCATACAAATGAGTAACGGCAGGCTGAGCCAAGGACCTCATTTCAAGatggctgctgcctacattccGATTAGCATTGTGAAGCATAAACTAAATAAACACGGAACACGTCGATACACACCGAAAGCGGTGACTCCGCAGATCATGACGATGTGTTATTCATCTGCCTGTGACCTACCGTTATTGATCACCAGCCCCGAGGgtcaaaatgtttatttcacACAACGTTTTCACCAAACATCTTACAATGTACGCTTCGATTAGGTCTGTGTTTGAGCTATAGTCATATGTAGGGGTATGAAGTTAATCCTTAGGTTGGTAGGAGCAAATCTAGTCTATTGCTAATGTTATTTGATGATGTATGACTTAGTGGCCACGGCGAACGTCCACCCACGGCGAACGTCCACCCAGTGTCTATCTTTGCGCATCAAAAATATGAAGTTGCCTGCTCTTTACATCCCGTGGGCATCCATTACACACGGGATTGGCTACTATGGCGCCTTGACAATCTTGTAGCCACTGAGATAAGCTTTTCGGGGATATGCAGTTGACCTGGGTCGAATAAAGCAAGCTTGTAACCTTTTTATGCGTAATGCGAACTATTGTTAcctggctcagacacgagacgcaCCAATCACGCTCCACTACATTGTAAACATTTCATCGCTTTAACATAAAATATTTCTTCTCGGGGGGGGGTAAGAACTAAGAATACTGAAAAGGAAGCTAAAAAGAACCACTATGAGTAAGTATACCGACATAGAAGCTTTGAATAAAATTCTGGACGGACTCGGATCAGGGGAGCGATCTGGACAACAAGGATTTCGACTCGGCCGACAAAAAGATTGCTTTCTAGAAGGATTGGATCCATGTTTAGATCCGAGGATGCAGAGGATTTTGATGATGCTGTTTGGGGGCCACACCTCCCCAgcaagcaccccccccccccccccccccccccatcttctgTCAGAAATGACAGTTCACTTTTTGTTCCCTGACAGAGAGGGACTGCTTCATAGACTATCACAACATGCACAAGCTACGGTGAAAGTGACATCTAATCATCTACACCTGGGATGTAAAAACAAACACGAATGCCATTTGGAAGTTCAGCTTATTTatgtttttgcaaaaaaaaaattgtgaaggacacgtgtgtgtgtgtgtgtgtgaccaagtTTGTTTGATAAGACCTATTTTTACATTTGGTTTATCTGTTGCTTTTTATATTGTTGTGAACAGTTCATTTGTATGTGGGACCAATACATTAGATATGCCTAGGCTAAATGTTCAGGCACTTTGGAGAGTGCCCCTGAaaccaccacaatgtttgagtGACGTTGGTGTTGTAGAAATGTAGTTTTTATAGTGAACAATAGTAGTTAGTTACTAATCCAGTGTGCAAAAACAGTGCAGTTACCAAATTCGGACACTTTcggacactttggagaggttgaaaGGACACTTGAATGTACCCTGGACACCCCATAACACCACCATGTTTGAGTGAGGTTCATATGGTAGAAACATTTTATACTGAACACATAGCATTTAGGAATTGCAAATATGTAATAGCACTGGAATGATCTAATTTGGAGAGGTTTAGGGACACTTGGAAACGTCCCATGACCACAACTGACACCACTTACTAGAACATCTGCCCATTTTGAGTTGTCAGGTCTATAaattccatttttatttttatgatatTGTTCACATGTTGTGGAAGCCATCTGATGTATTTCCTGCTCTGGGCATCAATAATTCACTTATAGCTTGTCAATGAAAGATGactttcaaaataaataaaaattaaaacacCGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035990.1 True 2444 mRNA 0.42 2 34897676 34900540
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489177 pp2aa coding downstream 270006 34622630 ~ 34627670 (-)
LOC110487787 sfxn1 coding downstream 278745 34586666 ~ 34618931 (-)
LOC118938726 NA coding downstream 454719 34441064 ~ 34443131 (-)
LOC110489166 LOC106604233 coding downstream 600006 34294193 ~ 34297670 (-)
LOC110489172 LOC106604229 coding downstream 605431 34288581 ~ 34292245 (-)
gm2a sap3 coding upstream 13520 34914060 ~ 34921098 (-)
LOC118938729 NA coding upstream 124634 35025174 ~ 35028163 (-)
LOC110489216 LOC106604190 coding upstream 141551 35042091 ~ 35082780 (-)
glra1 glra1 coding upstream 258075 35158615 ~ 35267880 (-)
thoc3 LOC106604138 coding upstream 634776 35535316 ~ 35538759 (-)
ccdc69 LOC106604205 non-coding downstream 13575 34883391 ~ 34904800 (-)
G1240679 NA non-coding downstream 31979 34862894 ~ 34865697 (-)
G1240642 NA non-coding downstream 39481 34857736 ~ 34858195 (-)
G1240622 NA non-coding downstream 81760 34814560 ~ 34815916 (-)
G1240595 NA non-coding downstream 120768 34776322 ~ 34776908 (-)
G1240706 NA non-coding upstream 6543 34907083 ~ 34907282 (-)
G1240713 NA non-coding upstream 25567 34926107 ~ 34926377 (-)
G1240785 NA non-coding upstream 63373 34963913 ~ 34964793 (-)
G1240829 NA non-coding upstream 128784 35029324 ~ 35029621 (-)
G1240833 NA non-coding upstream 133948 35034488 ~ 35034819 (-)
G1240534 NA other downstream 253524 34643135 ~ 34644152 (-)
G1240533 NA other downstream 255639 34641492 ~ 34642037 (-)
G1240399 NA other downstream 554785 34337823 ~ 34342891 (-)
G1239090 ogt other downstream 2201274 32695876 ~ 32696402 (-)
G1240963 NA other upstream 161383 35061923 ~ 35062319 (-)
G1240953 NA other upstream 207288 35107828 ~ 35125496 (-)
G1241697 NA other upstream 617237 35517777 ~ 35519330 (-)
matr3l1.1 LOC106604139 other upstream 682771 35578460 ~ 35589383 (-)
G1242169 NA other upstream 1515438 36415978 ~ 36418075 (-)

Expression

LOC118938728 Expression in all Baseline Samples

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LOC118938728 Expression in each Bioproject

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LOC118938728 Expression in each Sample
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Co-expression Network