gm2a (sap3)


Basic Information

Item Value
gene id gm2a
gene name sap3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 34914060 ~ 34921098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561850.2
aatggggtttgagaaggaggcgaggagagaggatgcgaggAGATAGATATTGAGATTTTATAATTTGTATTTGCGCCTCCTTTATTTCTATATGAAATTGGTCTTCAATCTCCTTTATTTCTATAAAGGAGGCGCAAATACAAATAGGAAAATCTCAGTATCTGCTCCTCGCGAAGTCTGTCACGAGCCTCGGGATTGATTTGATAAACACGGAAGTGAGACTGGACTTCATGGAAACAAATATTTACCGCACCGTCTCAACGTGTTGTGACGCAGTCATTCTCGATTCGTTTTAGCTGTGCACGGTCTTAGTTTACGCGCTTTCTGTTATCTTGAATTAACCCTAATTATTTCTAGTTCAGTTGTAGATTAGTTGAGCACGATGAAAAATTGTATTGTTATTAATGTGATAATGCTATGCATTGTAATGCAGGTGAATTGCACTTTGAATTTCGAGAAAACGCGCACAGCATATACTGTGAAGGTCTTTGGGTTCTCATGGGAGAACTGTGGTAAGCCAGACGACCCAGCGGTTCTGAAGACCCTAACCCTGTCCCCGGACCCCATCACAGTTCCAGGGGACCTAAAGGCCAGTGCGTCCGGGAACACAACCGTCGAGCTGGCCGCTCCCCTCGCTGTGAACGTGACACTGGAGAAGGAGGTGGCAGGGTTCTGGGTCAAGGTGCCGTGTGTGGAAGAGATTGGGAGCTGCCACTACGCAGACGGCTGTGACCTGCTCAACCAGCTGATACCGCCAGGACAGGACTGTCCTGAACCTCTACACACCTACGGCATCCCCTGCCACTGTCcctttaaagctGGGATGTACACGCTACCAGAGTCAGACTTCTACCTCCCTGACATTGACCTACCCTATTGGCTGACCAACGGACACTACAGGGTACAGGGAGTTCTGGGAGCTATGGGGAAAGAACTGGGCTGCCTCAAAATCACCTTTGCTGTCCACTCTAATAACTAAACGATGGATGAACGACCTCCTCTTTCCACTCTAGTTAAATGGAGGCTACAGGGAACATAAATGTGCCATTCAGTGAGCTGCGACACTGAACCTTTTTGTCGTCTTTATTCTCACGGGAACTTCTGCTCTCATCTCTTCTCATCTCAAACTGCCAATTGAGAACGGGGCCTGTATAGACAAAGTCTctctgagtaggagtactgatcaGTTTTACCTTTTACAATCGTAATGAATAGGAgggtggacctgatcctagatcagcactctgagaTACTTTGTGGATACTGGCCCTGTACCAAACAAGCAGTAACTGAGCTGCTACTGTAGTTAAGGATATGATTCAGTCGACTCACTTTCAGGTCAAACAGTTGAGTGGTTTGCATGGCTTCCTACTGGCTTTCTACTGTACTGCTATGAACTTGTCGTCACCTGTTTTGATTCTTTTTCACAGTGTTTTACACTCTTTTTTTTTATACAGAATGAATTTTATTAGATTTCCTTGTCAAGGGTGAATGGCCGTGGGTATGCTTCTATTGCTCATTGGCTTCTACCCTAGGTAAGGTGCTGGTCACATGACTAGGAGTTTTTATTGTGCCATAGTCGTTTCTGGCTGACTCTTATTGTGTCATTCGTTTTTGGTTCTATGGATTGTAATGCTACTTCCTGTTGCTAGTGGTGACACTTTTGATTTTAGAACCCCTGGGAATATGTTGTTCTTCCTGTTGATTTGTGTATTGATCAGTTTTCTTCTGAAGGTGTTTTTATTGTTGACATATTCAAAGTGCCTAAGTAGACCTGCTGGAATTGAGGTCTACGAATCAAGTGTGACTGTGTGATGTTTCAAAGGGAAATGGGATTAATACAGACAATCAATTCCCTCCTTATAATACCAAAAGCCTAATCCCATTCTATAACCGGTTAAAGTGTTCTTAAATCAAAATTCAAATGAAATGGTAGTCAAGTATCAAAGTTTTTAGGAATCAACATGAAAAATTGCACCTTGATTATTTAGAAATGACATTGCTTACAACTGTAACAAATCAGCATTCCTGGCTAATATTTCACTGTAAAAcccttttttaaataaaataatacccTATATGTTG

Function

NR:

description
ganglioside GM2 activator-like

GO: NA

KEGG:

id description
K12383 GM2A; ganglioside GM2 activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561850.2 True 2085 mRNA 0.43 4 34914060 34921098
Loading

Neighbor

gene id symbol gene type direction distance location
ccdc69 LOC106604205 coding downstream 9260 34883391 ~ 34904800 (-)
LOC118938728 NA coding downstream 13520 34897676 ~ 34900540 (-)
LOC110489177 pp2aa coding downstream 286390 34622630 ~ 34627670 (-)
LOC110487787 sfxn1 coding downstream 295129 34586666 ~ 34618931 (-)
LOC118938726 NA coding downstream 471103 34441064 ~ 34443131 (-)
LOC118938729 NA coding upstream 104076 35025174 ~ 35028163 (-)
LOC110489216 LOC106604190 coding upstream 120993 35042091 ~ 35082780 (-)
glra1 glra1 coding upstream 237517 35158615 ~ 35267880 (-)
thoc3 LOC106604138 coding upstream 614218 35535316 ~ 35538759 (-)
shtn3 LOC106612280 coding upstream 618588 35539686 ~ 35566407 (-)
G1240706 NA non-coding downstream 6778 34907083 ~ 34907282 (-)
G1240679 NA non-coding downstream 48363 34862894 ~ 34865697 (-)
G1240642 NA non-coding downstream 55865 34857736 ~ 34858195 (-)
G1240622 NA non-coding downstream 98144 34814560 ~ 34815916 (-)
G1240713 NA non-coding upstream 5009 34926107 ~ 34926377 (-)
G1240785 NA non-coding upstream 42815 34963913 ~ 34964793 (-)
G1240829 NA non-coding upstream 108226 35029324 ~ 35029621 (-)
G1240833 NA non-coding upstream 113390 35034488 ~ 35034819 (-)
G1240957 NA non-coding upstream 115467 35036565 ~ 35037212 (-)
G1240534 NA other downstream 269908 34643135 ~ 34644152 (-)
G1240533 NA other downstream 272023 34641492 ~ 34642037 (-)
G1240399 NA other downstream 571169 34337823 ~ 34342891 (-)
LOC110489172 LOC106604229 other downstream 621890 34288581 ~ 34292245 (-)
G1239090 ogt other downstream 2217658 32695876 ~ 32696402 (-)
G1240963 NA other upstream 140825 35061923 ~ 35062319 (-)
G1240953 NA other upstream 186730 35107828 ~ 35125496 (-)
G1241697 NA other upstream 596679 35517777 ~ 35519330 (-)
matr3l1.1 LOC106604139 other upstream 662213 35578460 ~ 35589383 (-)
G1242169 NA other upstream 1494880 36415978 ~ 36418075 (-)

Expression

gm2a(sap3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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gm2a(sap3) Expression in each Bioproject

Bar chart with 21 bars.
gm2a(sap3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network