Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118938729 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 35025174 ~ 35028163 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protocadherin Fat 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035991.1 | True | 394 | mRNA | 0.53 | 3 | 35025174 | 35028163 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gm2a | sap3 | coding | downstream | 104076 | 34914060 ~ 34921098 (-) |
| ccdc69 | LOC106604205 | coding | downstream | 120374 | 34883391 ~ 34904800 (-) |
| LOC118938728 | NA | coding | downstream | 124634 | 34897676 ~ 34900540 (-) |
| LOC110489177 | pp2aa | coding | downstream | 397504 | 34622630 ~ 34627670 (-) |
| LOC110487787 | sfxn1 | coding | downstream | 406243 | 34586666 ~ 34618931 (-) |
| LOC110489216 | LOC106604190 | coding | upstream | 13928 | 35042091 ~ 35082780 (-) |
| glra1 | glra1 | coding | upstream | 130452 | 35158615 ~ 35267880 (-) |
| thoc3 | LOC106604138 | coding | upstream | 507153 | 35535316 ~ 35538759 (-) |
| shtn3 | LOC106612280 | coding | upstream | 511523 | 35539686 ~ 35566407 (-) |
| si:rp71-1d10.5 | tmm80 | coding | upstream | 538646 | 35566809 ~ 35571846 (-) |
| G1240785 | NA | non-coding | downstream | 60381 | 34963913 ~ 34964793 (-) |
| G1240713 | NA | non-coding | downstream | 98797 | 34926107 ~ 34926377 (-) |
| G1240706 | NA | non-coding | downstream | 117892 | 34907083 ~ 34907282 (-) |
| G1240679 | NA | non-coding | downstream | 159477 | 34862894 ~ 34865697 (-) |
| G1240829 | NA | non-coding | upstream | 1161 | 35029324 ~ 35029621 (-) |
| G1240833 | NA | non-coding | upstream | 6325 | 35034488 ~ 35034819 (-) |
| G1240957 | NA | non-coding | upstream | 8402 | 35036565 ~ 35037212 (-) |
| G1240973 | NA | non-coding | upstream | 63793 | 35091956 ~ 35093064 (-) |
| G1240987 | NA | non-coding | upstream | 98853 | 35127016 ~ 35127300 (-) |
| G1240534 | NA | other | downstream | 381022 | 34643135 ~ 34644152 (-) |
| G1240533 | NA | other | downstream | 383137 | 34641492 ~ 34642037 (-) |
| G1240399 | NA | other | downstream | 682283 | 34337823 ~ 34342891 (-) |
| LOC110489172 | LOC106604229 | other | downstream | 733004 | 34288581 ~ 34292245 (-) |
| G1239090 | ogt | other | downstream | 2328772 | 32695876 ~ 32696402 (-) |
| G1240963 | NA | other | upstream | 33760 | 35061923 ~ 35062319 (-) |
| G1240953 | NA | other | upstream | 79665 | 35107828 ~ 35125496 (-) |
| G1241697 | NA | other | upstream | 489614 | 35517777 ~ 35519330 (-) |
| matr3l1.1 | LOC106604139 | other | upstream | 555148 | 35578460 ~ 35589383 (-) |
| G1242169 | NA | other | upstream | 1387815 | 36415978 ~ 36418075 (-) |
