si:rp71-1d10.5 (tmm80)


Basic Information

Item Value
gene id si:rp71-1d10.5
gene name tmm80
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 35566809 ~ 35571846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943421.1
gtatttacaatggtgtttgttcttcactggttgttaTTCTATCTATCTCTGGGTGCGGCGTCTGTCTCCATGGTAAATAAACATGGCGGTGTCCGGAAAACATCCAATtTTGTCTTCCACACCACTGCAGGTCCTGTTCTACCTCAACAGCTGGTATTTTGCTGCCTACTTCCTTGCTGAGGTTCTGATGTTTGTTTACAAAGGATTGTTGTTACCATACCCACCAGCAAGTCTCACGTTGGATGTTGGGCTTCTACTTGTTTTCCTGGGCCTTGAGTCCCTCCGAATATTTTACGGTTGGAAGGGGAACTTAACAGAGCGTTCTCTGGCCATGTCAGTGAGTGTGCTCGTCCTGGTGCCGTGCACAGTGCTGTCTGTGTACTACCTGATGCTGCAGACATTCGTCCTGCGCCTGGAGTTCATCCTTAATGCTGTGTTACTCTGCTTCTACAGTCTGGAGATGCTGCTAGGAATCATGTCCATATCTGCTTTCTCCAGGTCAAAGGtgtactgaggaggaggaatgctgcaaTGTTCCACATCGTTTCAAGAGGAATGAAGAAAGGGTTTTCACCAGGATTGTTATGTGAACATATTTAAATCCCACATGTTGTAGTTTTTATATTGTCTGTTAATAGCcgaaatatttatatttttgtaacGATGAAATGTCAtctattttataattttttttgtacctgtttttgtATCAACTGTCAATCTTGTATGGTACTAGCAGCACCAATGGGATTGTCTTATGAGGTTATTCCATCTGCTGTGCCTGATAATGGAATGTATTTGtacaatttttgttgttgttgattcagAGCACTATATTTCATTATTTACTTTAATAAATACAATtcctcattcattcattca
>TU1417255
TTGAGCTATTGATCTAAAAGTTTTTGTCAACAGGAAGCAGCAACAGCATCACTTTCAACTTAAGTTTTAGGAAAATAAATTGAACTTTCAACATGAATTTCCAAAGGTATTGGACTTACTCAGGGGGAACTGCcgagtgagtccaaaaatgtgctgtgatttattttgatgaTAAAGGCTACCAGAAATCCCCAAAATGGGTTTGCCCTGCCTACTCATATCATAGACCCTTGGTTATATCATCTGCCAGTGGGCTACCATTTGCAAGTCTTCGATATGACCTTAACGACACATCTCAGTTGTCTTCCACACCACTGCAGGTCCTGTTCTACCTCAACAGCTGGTATTTTGCTGCCTACTTCCTTGCTGAGGTTCTGATGTTTGTTTACAAAGGTTTGTCGTCTACTCAAATGGTCACACAACGGGGACATAAAGTCATGTTTAATCGATCACTCACTGATGAGTGATGTTTTTGCAAACCCAGGGTCAAGGCCAAAAGCAAAATGATAGATTTCTAAATATGCCTTTTGTATTTCCACAGGATTGTTGTTACCATACCCACCAGCAAGTCTCACGTTGGATGTTGGGCTTCTACTTGTTTTCCTGGGCCTTGAGTCCCTCCGAATATTTTACGGTTGGAAGGGGAACTTAACAGAGCGTTCTCTGGCCATGTCAGTGAGTGTGCTCGTCCTGGTGCCGTGCACAGTGCTGTCTGTGTACTACCTGATGCTGCAGACATTCGTCCTGCGCCTGGAGTTCATCCTTAATGCTGTGTTACTCTGCTTCTACAGTCTGGAGATGCTGCTAGGAATCATGTCCATATCTGCTTTCTCCAGGTCAAAGGtgtactgaggaggaggaatgctgcaaTGTTCCACATCGTTTCAAGAGGAATGAAGAAAGGGTTTTCACCAGGATTGTTATGTGAACATATTTAAATCCCACATGTTGTAGTTTTTATATTGTCTGTTAATAGCcgaaatatttatatttttgtaacGATGAAATGTCAtctattttataattttttttgtacctgtttttgtATCAACTGTCAATCTTGTATGGTACTAGCAGCACCAATGGGATTGTCTTATGAGGTTATTCCATCTGCTGTGCCTGATAATGGAATGTATTTGtacaatttttgttgttgttgattc

Function

NR:

description
Transmembrane protein 80

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943421.1 False 882 mRNA 0.41 6 35566809 35571846
TU1417255 True 1163 lncRNA 0.41 3 35566866 35569489
Loading

Neighbor

gene id symbol gene type direction distance location
shtn3 LOC106612280 coding downstream 402 35539686 ~ 35566407 (-)
thoc3 LOC106604138 coding downstream 28050 35535316 ~ 35538759 (-)
glra1 glra1 coding downstream 298929 35158615 ~ 35267880 (-)
LOC110489216 LOC106604190 coding downstream 484029 35042091 ~ 35082780 (-)
LOC118938729 NA coding downstream 538646 35025174 ~ 35028163 (-)
matr3l1.1 LOC106604139 coding upstream 6614 35578460 ~ 35589383 (-)
LOC110489212 LOC106604141 coding upstream 17576 35589422 ~ 35592014 (-)
neurog1 LOC106604142 coding upstream 82458 35654304 ~ 35656076 (-)
LOC110487789 LOC106594768 coding upstream 92298 35664144 ~ 35732070 (-)
LOC110489483 LOC106604145 coding upstream 162032 35733878 ~ 35763121 (-)
G1241695 NA non-coding downstream 52879 35513534 ~ 35513930 (-)
G1241692 NA non-coding downstream 61434 35504174 ~ 35505375 (-)
G1241691 NA non-coding downstream 63018 35503192 ~ 35503791 (-)
G1241678 NA non-coding downstream 91730 35474247 ~ 35475079 (-)
G1241156 NA non-coding downstream 197425 35368214 ~ 35369384 (-)
G1241743 NA non-coding upstream 42282 35614128 ~ 35615289 (-)
G1241744 NA non-coding upstream 46410 35618256 ~ 35618582 (-)
G1241764 NA non-coding upstream 106875 35678721 ~ 35679400 (-)
G1241766 NA non-coding upstream 115950 35687796 ~ 35689094 (-)
G1241773 NA non-coding upstream 145223 35717069 ~ 35717465 (-)
G1241697 NA other downstream 47479 35517777 ~ 35519330 (-)
G1240953 NA other downstream 441313 35107828 ~ 35125496 (-)
G1240963 NA other downstream 504490 35061923 ~ 35062319 (-)
G1240534 NA other downstream 922657 34643135 ~ 34644152 (-)
G1240533 NA other downstream 924772 34641492 ~ 34642037 (-)
G1242169 NA other upstream 844132 36415978 ~ 36418075 (-)
G1243234 NA other upstream 1873923 37445769 ~ 37446210 (-)
G1243718 NA other upstream 2200785 37772631 ~ 37773270 (-)
G1244197 NA other upstream 2928841 38500687 ~ 38500999 (-)

Expression

si:rp71-1d10.5(tmm80) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

si:rp71-1d10.5(tmm80) Expression in each Bioproject

Bar chart with 21 bars.
si:rp71-1d10.5(tmm80) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network