Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489244 |
| gene name | LOC106594455 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 40751881 ~ 40757026 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| docking protein 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021561883.2 | False | 2184 | mRNA | 0.45 | 1 | 40751881 | 40754064 |
| TU1422534 | False | 2563 | TUCP | 0.47 | 4 | 40754022 | 40757026 |
| TU1422537 | True | 1978 | lncRNA | 0.47 | 4 | 40754022 | 40757026 |
40,748,000
40,749,000
40,750,000
40,751,000
40,752,000
40,753,000
40,754,000
40,755,000
40,756,000
40,757,000
40,758,000
40,759,000
40,760,000
40,761,000
40,762,000
NC_048578.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487794 | LOC104930052 | coding | upstream | 1305819 | 39374971 ~ 39446062 (+) |
| LOC110489250 | higd2a | coding | upstream | 1413197 | 39336650 ~ 39338684 (+) |
| LOC110487796 | LOC106612310 | coding | upstream | 1436370 | 39274667 ~ 39319184 (+) |
| LOC110489247 | syub | coding | upstream | 1581602 | 39133840 ~ 39170279 (+) |
| LOC110489232 | LOC106604128 | coding | upstream | 1899572 | 38847546 ~ 38852309 (+) |
| LOC110487799 | LOC106591130 | coding | downstream | 304011 | 41058075 ~ 41313284 (+) |
| LOC110487960 | LOC106604105 | coding | downstream | 615552 | 41369616 ~ 41376006 (+) |
| neurl1b | neurl1b | coding | downstream | 724575 | 41478639 ~ 41504607 (+) |
| LOC118938735 | LOC106604103 | coding | downstream | 831003 | 41585067 ~ 41590216 (+) |
| LOC110487965 | LOC106604102 | coding | downstream | 845217 | 41599281 ~ 41602756 (+) |
| G1246046 | NA | non-coding | upstream | 2138 | 40748814 ~ 40749743 (+) |
| G1246038 | NA | non-coding | upstream | 11238 | 40740407 ~ 40740643 (+) |
| G1246035 | NA | non-coding | upstream | 13164 | 40738441 ~ 40738717 (+) |
| G1246033 | NA | non-coding | upstream | 48731 | 40702715 ~ 40703150 (+) |
| G1246022 | NA | non-coding | upstream | 57486 | 40689317 ~ 40694395 (+) |
| G1246061 | NA | non-coding | downstream | 46988 | 40801052 ~ 40801371 (+) |
| G1246073 | NA | non-coding | downstream | 58461 | 40812525 ~ 40813092 (+) |
| G1246074 | NA | non-coding | downstream | 59519 | 40813583 ~ 40814107 (+) |
| G1246082 | NA | non-coding | downstream | 63602 | 40817666 ~ 40817960 (+) |
| G1246079 | ddx41 | non-coding | downstream | 91384 | 40845448 ~ 40846783 (+) |
| G1246017 | NA | other | upstream | 90317 | 40661222 ~ 40661564 (+) |
| G1245154 | NA | other | upstream | 1017038 | 39734296 ~ 39734843 (+) |
| G1244560 | NA | other | upstream | 1408801 | 39335475 ~ 39343080 (+) |
| G1244545 | cdhr2 | other | upstream | 1519245 | 39229030 ~ 39234285 (+) |
| G1246102 | NA | other | downstream | 124677 | 40878741 ~ 40888509 (+) |
| G1246103 | NA | other | downstream | 125952 | 40880016 ~ 40886551 (+) |
| LOC110489238 | LOC106604092 | other | downstream | 1614398 | 42368435 ~ 42377369 (+) |
| LOC110519852 | LOC106604089 | other | downstream | 1690511 | 42444535 ~ 42493206 (+) |
