G1202875


Basic Information

Item Value
gene id G1202875
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 971102 ~ 971561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1374153
ctgactgagcatacaagcatacaagtatctaagtatctgactgagcggtggtaggcagaagcaggcgcgtaaacattaattcaaacagcactttcgtgcgttttgccagcagctcttcattgtgcgtcaagcattgcgctgtttatgacttcaagcctatcaactcccgagatgaggctggtgtaaccgaagtgaaatggctagctagttagcgcgcgtgctaatagcatttcaaacgtcactcgctctgagccttctagtagttgttccccttgctctgcatgggtaacgctgcttcgagggtggctgttgtcgttgtgttcctggttcgagcccagggaggagcgaggagagggacggaagctatactgttacactggcaatactaaagtgcctataagaacatccaatagtcaaaggttaatgaaatacaaatggaacagagggaaatagtcctata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1374153 True 460 lncRNA 0.47 1 971102 971561

Neighbor

gene id symbol gene type direction distance location
LOC110488511 rnf212 coding upstream 200356 762890 ~ 770746 (+)
si:ch211-255i20.3 LOC106604974 coding upstream 210475 750392 ~ 760694 (+)
LOC110512013 ctbp1 coding upstream 219482 732078 ~ 751620 (+)
LOC118938770 LOC106604976 coding upstream 321960 644145 ~ 649142 (+)
LOC110488532 slbp coding upstream 489816 467839 ~ 481286 (+)
LOC110488542 NA coding downstream 136228 1107789 ~ 1116632 (+)
LOC110488544 LOC106604961 coding downstream 985755 1957316 ~ 1961986 (+)
LOC110488545 LOC106604959 coding downstream 1339506 2311067 ~ 2321285 (+)
LOC110488546 LOC106604958 coding downstream 1369436 2340997 ~ 2516222 (+)
LOC110488547 LOC100136420 coding downstream 1643796 2615357 ~ 2616987 (+)
G1202833 NA non-coding upstream 21735 949127 ~ 949367 (+)
G1202829 NA non-coding upstream 29154 941666 ~ 941948 (+)
G1202825 NA non-coding upstream 31319 939357 ~ 939783 (+)
G1202816 NA non-coding upstream 36953 933948 ~ 934149 (+)
G1202751 NA non-coding upstream 75754 895140 ~ 895348 (+)
G1202905 NA non-coding downstream 21383 992944 ~ 993166 (+)
G1202909 NA non-coding downstream 27290 998851 ~ 999217 (+)
G1202925 NA non-coding downstream 40260 1011821 ~ 1012035 (+)
G1202940 NA non-coding downstream 49387 1020948 ~ 1021222 (+)
G1202959 NA non-coding downstream 62011 1033572 ~ 1033791 (+)
G1202826 NA other upstream 29928 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2180143 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2202941 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3355992 4327546 ~ 4477610 (+)
G1207553 NA other downstream 3950580 4922141 ~ 4922560 (+)
G1208884 NA other downstream 4932360 5903921 ~ 5907769 (+)

Expression


Co-expression Network