XLOC_031154 (tcnba)


Basic Information

Item Value
gene id XLOC_031154
gene name tcnba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30617915 ~ 30620625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060507
TAAATAGAGTGTGAGGTCTTTAGAGACATTCAGAAACCCCGACTAGTAGAATGGCTCTGACAGCGATCAGTCTTTTGTGCTTCACGGCTTTGCTGTGTTTCCCAGCTCTGGGACTGCCTGCGGACTCagGCAAGCTGGAAGAGATACCCGTTAAAGTGACAATAGTTAATGATTTCACCAATGAGCAACTCTCCTACTCTACCACTGTGATCCAGGAAGGCCTGATGTTTGGAGTGCTAAATCAACTGATGGAATCCAATGCAGACTTCAAATTCAGTTACACTATTCACCATACCTTCGGCATATATCTGGAGAGCGTGAACGGACTGGCTGGATCTGATGAGGATCAGACATACTGGGAGCTTTTGTCTGAGAAAAGCGGAGTCGTGACCCGGCTGGAAGTGGGAATCGGCTGCTACCAAGTTCAGAGGGATGAGAATTTGATCCTGAGGTTCACCACTTGGGCcacaaagaaatgaatgaattgaatttgTAGTTTTAAAAGTTACTGCTGAATTAACACCACATCTTGTTTCAGTCATGTAATCAACAagtttaactgaataaataaactcATTTCATTGTGTCGAAGTAATACAGCACTAATAAATATAAACTGACAGATCTGAATCAAATCTctgtttgattaaataaa

Function

symbol description
tcnba Enables cobalamin binding activity. Predicted to be involved in cobalamin transport. Predicted to be active in extracellular space. Is expressed in intestinal bulb and intestinal bulb epithelium. Human ortholog(s) of this gene implicated in congenital intrinsic factor deficiency and pernicious anemia. Orthologous to human CBLIF (cobalamin binding intrinsic factor) and TCN1 (transcobalamin 1).

GO:

id name namespace
GO:0015889 cobalamin transport biological_process
GO:0005615 extracellular space cellular_component
GO:0031419 cobalamin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-123 Enables cobalamin binding activity. Predicted to be involved in cobalamin transport. Predicted to be active in extracellular space. Is expressed in intestinal bulb and intestinal bulb epithelium. Human ortholog(s) of this gene implicated in congenital intrinsic factor deficiency and pernicious anemia. Orthologous to human CBLIF (cobalamin binding intrinsic factor) and TCN1 (transcobalamin 1).

Ensembl:

ensembl_id ENSDARG00000068088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060507 True 655 mRNA 0.42 4 30617915 30620625

Neighbor

gene id symbol gene type direction distance location
XLOC_031153 tcnbb coding downstream 2014 30614532 ~ 30615901 (-)
XLOC_031152 c2cd2l coding downstream 29366 30537640 ~ 30588549 (-)
XLOC_031151 h2ax coding downstream 82588 30534702 ~ 30535327 (-)
XLOC_031150 arcn1a coding downstream 101269 30502249 ~ 30516646 (-)
XLOC_031149 phldb1a coding downstream 126743 30427198 ~ 30491172 (-)
XLOC_031155 ift22 coding upstream 81459 30702084 ~ 30704390 (-)
XLOC_031156 ftr82 coding upstream 86508 30707133 ~ 30715225 (-)
XLOC_031157 spns2 coding upstream 182173 30802798 ~ 30924453 (-)
XLOC_031158 CR753844.1 coding upstream 308422 30929047 ~ 30930288 (-)
XLOC_031159 spns3 coding upstream 336356 30956981 ~ 30984271 (-)
XLOC_031147 BX294389.1 non-coding downstream 225323 30390893 ~ 30392592 (-)
XLOC_031140 NA non-coding downstream 566357 30036486 ~ 30051558 (-)
XLOC_031139 NA non-coding downstream 716812 29896636 ~ 29901103 (-)
XLOC_031136 NA non-coding downstream 863576 29746319 ~ 29754339 (-)
XLOC_031133 NA non-coding downstream 1024394 29589820 ~ 29593521 (-)
XLOC_031161 NA non-coding upstream 461714 31082339 ~ 31113121 (-)
XLOC_031162 NA non-coding upstream 645649 31266274 ~ 31274665 (-)
XLOC_031165 NA non-coding upstream 1054028 31674653 ~ 31676807 (-)
XLOC_031166 NA non-coding upstream 1070465 31691090 ~ 31692364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_05987848_05990050 TCNL coding CI01000339 null 5987718 ~ 5990078 (-)