XLOC_031157 (spns2)


Basic Information

Item Value
gene id XLOC_031157
gene name spns2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30802798 ~ 30924453 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060510
CACTCCTAGACTCGCAGAATTGAATGGGCGTGGCTTGGAGAGCACGCCTCCCTCCACTACACTCCACAGAGGAGCGCAGACCGAGCGCTCAATGCTGTCAATGTACAGACATGAACCGAGCTCAGCGAGCAATAATCAAATCAAAGCTTTTTATTCTCCGCGATTAACACTTAGTTTTTTCCGTTTTCCGCTAATAGGTTCAACACAATTTTTCCACCTTAACCGTCGTTTTGGAAAACAAAATCGTTCAATCGTTTGCGCTGGATCTTTCTTGCCAGAAGATGTGTGTGGAGAGCGATGGATGTGAAATCGAGGGGTGCAGCAGTTCGGATGAGGTGCACACGCTGTCTGGAAGCATGAGTCCGGCTCTTAAATCCAGAGATCTGCATCACTGCAGACCTGGGCAGAAATTCCATGCCGCATTACTCCGATGCCGGACTCCGCTTGTAGCCGCCGGGATTCTGAGTTTTGGAAATGTGCTCAATTACATGGACAGATACACCGTAGCAGGTGTCCTGCTTGACATACAGAAACAATTCAAAGTTGGTGACAGCAGTGCGGGCTTGCTGCAAACAGTCTTCATCTGCAGTTTCATGGTGGCCGCCCCCATTTTTGGTTACCTGGGGGATCGCTTCAACAGAAAGATCATCCTGAGCTGTGGAATCTTTTTCTGGTCCGCTGTGACGCTGCTAAGCTCTTTCATTACCAAAGAATATTACTGGTTGTTAGTGCTGTCCAGATGCTTGGTGGGTATTGGAGAATCAAGCTACTCATCTATCTCTCCGACTATCATCGGAGACCTGTTCACGAACAACAAAAGGACTGTGATGCTCTCTGTCTTCTACCTGGCCATCCCACTGGGAAGCGGTCTGGGCTACATCCTGGGATCAATTGCTAAAGATGCTGGAGGGCATTGGTACTGGGCACTGAGGGTTTCTCCTATGTTGGGTCTGACTGCTGGGACGCTCATCCTCATCTTTGTCTCAGAACCGAAGAGAGGAAGCGCTGACCAACCTGGTGGACGATTAAAGACACGCACTTCCTGGGTCTGTGACATGAAAGCTCTCGCCAAAAATCGTAGTTATGTATTTTCATCTCTGGCATCGGCTGCTGTGTCGTTTGCCACGGGGGCATTTGGGATCTGGATCCCACAGTACCTGGTCAGAGCTCAGGTGGTGCAAAAGTCAGCAGAGAGCTGCACATATCAACCCTGCAGCAGCAGAGACAGTTTAATATTTGGAGCCATCACATGTGTGACGGGGCTGCTGGGAGTGGTGATCGGTGCTGTGACCACACGACTTTGCCGTCAGAAGACGGAGCGTGCCGACCCGCTGGTGTGTGCGGTCAGCATGCTGGGTTCTGCCATCTTCATCTGCCTCATCTTTGTTGTGGCCAAGAAGAGCATAGTTGGAGCTTATATCTGCATTTTCATTGGAGAGACGCTGCTCTTTTTGAACTGGGCCATTACAGCGGACATTTTAATGTATGTTGTCATACCCACTAGAAGAGCCACTGCTGTTGCCTTCCAGGGCTTCACCTCGCACTTACTAGGGGATGCTGGGAGTCCGTACCTCATTGGCCTGATATCAGACTCGCTGCAGGAGAGCTACGCTACGTCAGAGATATGGCAGTTCCTGAGTTTGGGATATGCCCTCATGCTCTGCCCCTTTGTCATCGTTCTGGGGGGGATGTTCTTCCTGGCCACCGCCCTGTTCTTCCTTGATGATCGTGACAAAGCCGCCAAACAAGTAAACCAGCTTGCCCGGCCGCCGTCAACAGTTAAGGTTACCAAATGAGAAGAGGCTTCTGCAATGGGACAAAAGTGGAATGAAAACGCGGGCAAGTGGAGGGAAATAAAATTAGAAGGAATCAAACTAGCAGCTATCTCATATACGCACACTCGCCATCATCGTCATTTCTGCTTTTTCGTTCCACGAAGGCTGTTCGGTATTTGAGCCGCACCTTGCTTGCCCCGGTAAGCCCGTCAGCCAATCAGCAGCTGGTGTGCAGCTATTAAGGATGTATATAAAGAGCCATGTGAGCTCAGATAGGTGCCATACTACTGAACGCAGCACGGACACTCACTACCGTCCTGTCACTCTGCCTGTCGATCTGCACCAAGTGCCATAGCATCACATTCCTAACGGGGACCAGTACCAATGATGCTCAGAAGCCAACAGGGGCTCGCCAACACACCAAAATCATTCAAGAACTGAAGGACTTGCATCACATCAGCGCCCCAACAAAAATAAGCAACACGGTGAGCCCTGCCTTAAAGAAATCCGGCAGAAGCACGGGTCTGGTCCCCGGTCACTTTTCTTTCATAAAGATCCTCTCTGTTTTCCTATTAAGAAATGTATTTTCCGTTCTTTTCTTTCTTAGCACTTAGCACATTTTTAATGCAGTGGCAGTGACATCATGCAACCTCGCATGACACCTGAGACTGTTGAAACCGCTCATCTTTTCTCCTCTGTGTGTTTTTACTATGGAAACTGGAGGGACTTCATAAACTAGAGCTGAAAGGGACACTGGATTGTAAATATTATCTTTTTATAATGAAGGATCAACATGTAAATGCTTTCATACTGAAACAGGCTGCCAGGATATATCGCATAGTACGTCCTGAAAGGAGAGCAGAAGTACTCCAAAAAAGAAATTGTTAACAGGTGAACAAAGCCAAGGTTATCAATACACTTATCTAGTGTTTTTCGGCGAGGAATTCTTTCTGCAGTGCTGGGTTTCCCACTCAGCCAGGCAAACCTTCATTTTAACTGCGGATAAGATTCGCAAGCTCAGTCTGGAAGAATGAAAGTCTTTGTATGTTGGCTTACCTTGCTTATTTGGTTTTACATATCCCTTTACTGGAAAAGAAGAGAGGGAAAGGATGATAGCGTACCGTGGCCAAGTTAATTAGCTACACTGCAATCCATCCGTTTTCAAAAAAGGGAGAACTCAGAGGTTAAGCTAtgtctggattgcttttttgtggattctgtgaattttttgtgaactttttttGATAAACAGAGGACAGATATTTGAATACTATATATTGCGTTCGCTAAGAAAAGCACTTTGCTTTTCACCGAGGAGTCTTGAATATGAAGAGATACAATTGGTGGGTAAAATTGCAGAAAATATTGAGTTTGCGCTATTATTGGCCTGTGCAGATTTATGTTAGGATATAGTTTGTAATATATGCAATTTAAAAGAAGATGCGTCATTAATGGACATGACAGCTTTGACAGTGGCAATAATTTGTATATTCTCATATTTAGCAAGATTttctcagcacacacacacacacacaccactgtcaCTTTTCAGCAACCTGTTGTTACCAAATCTGTCTAAAGCCGTTCAAGTGTAAATCTGTTCTCAGAGAGAAGCCGATGCTTTTTCCCACCTTGAAAAAAGCACCTTGCCTATAGATTTAAAGTGGAAAAAAAGCTAATCCGTGTTTTGAAGGTCTGACTTGACACGTCATGTGAAATTACCGTCCCTATTTTCCAGTCATATCCTCTTAGCTTTCTTCGTGCCAGGTAAAAAGCCTTTGAATGTGATTCTGTCCAATCCAATGCGTTTACACATGCAAATTGATCTTAATGAagcttttgtattattattattcttttacagatgtctctttttctttctttttacaaatatgagttttatatataaacactataaagaTAAACTATATTATGCAGcaattttaatataatgtaaactGCTTTGATGcaatgtatttattatgtttttgtttatttgctaccCTTGCTGATAAGACGGGAAAATAATGTCATAGTTATTATGTACAGTTCTGTTTTTTGTGTTTGAAAATGCCTCCTTATCACCATTTGAAGAGTCTCTCAGTTGTTCATCTCAGAAAGCTGTTTTCACAGGAGCCAATTATGTTACTgctttacgcacacacacacaaatgcacacacagcaTGATTTACATACACGTGTTGCGTACCGACATGTTTGTTAGACCAATGAACTGATACTTTAACCTGATTTATTTTGCACAAGCAACTGGGTGTGTGAATGATGTGCTGATCAGGGGGTTTTCTCTTACTGTCTATCCAATAGTTCTACACTGGCATTTTGTAAGTGCTAGCTTTGAGGGATTATTACCCGTTCACTGCCTGGCTACTAGCTTTTCAAAGTTATTTTACATGCTGTCAATGATTAaatgaatattgtttatttgtctgCTGAAAGGCAACGCTCGCGGTGATCCAGATCGGATGAATGCTTGGCTCAGTATTTGTGAGGCCAAGTTTCTTTTATCAACAAAACCCGATGCTGTTTTATGAAACCGTTTTTATTGCTGAACCGTGAGCGTTGAGTTTTTCAGATTGCACATTTTCTTGTCATACAAGAATTCTGTAAAAATGAACCTATTTCTGATGTTAAGCAGAAATTAaaaggtgattttattttttagagcaAGTTGTGATTATAAAGAAGAAAAGTATCTAGGACGTTTACTGTGATGCCCCCACAGGGATATAACCCTATATGTAACTGAtcaaaataaacttatttaatCAAAGCTGGGAAAtatgttgtctttatttaacctGAGGTTCAACACAAGATGAataatgtattgtaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacatacatacatacatgcatacatgcatacatgcatacatacatacatacatacaatttattattattttgccttTTGTatcattacataaaaataaaaaaaaaatcataatttgaatttattgaccttattttttgttaatgagcAGGCGCAGCCTGAATATCATTTGGTCGAGACATCTGGTCTGATACACTTCGaataatttttagacattaaaatcaGCAAATGATGTTGcaaattgatattttcttattatattattctgctttgtttaTATAGTcctgaacacacttgtttgtagagcaaattTGACAGTTTGACAGTTTTCTGCCGTTTACTATATCATTCCTCCTAAAAGCAACTGAATCTAATTCTAAATTTCTAGTTCTAAATCTGGTTCTAAAGTTCTAAAGTTCTCAAATCAATCGCATGAATGAGCGCACATCTGTATTTTAGAATATCCCTCTACTGCACTCTTTATGACagatctgtaaaaaaaatattttactgtttttcttttcttagaatGGCTAAACTTGAAGTGTTGTAAAACAAAATTGtcgaaaatgtattttttaaggtacttgatgatatgttgccatatggcaacaacatCCAACAGTGGatccaatttatttaaatttatataaatttataactttccttataattaatattttgtaaatgatTAAATTTGTGTTGCAGTATTACAATCCtaaacacagaacttataaatgacatcttctacatactttccaacaactCATATTTCAacaactttcatttattttattctgtttgctGAATATTACTGAAAACAaacctaatattgtattatcatgtatacaacatacagtaggTATAAACATTTCCTCCAGTAagaattataacaaataaataacaggtcTAATATATCCATATGCAACAGAATAACTTAGCTATTAgctaacaatatttatatattatactatatactatgcTACACCTGTCCTACATGCCTCTGAGTCTCCATTACTGCTCTTATTAGATGTccaatctgcatcattctcatggtcactaaaactcATCTCATCCTCATTTTCATCTGCAGGATGAGCCATTTCTGttcttttcttcttttacttatcaTAGAACATGGTAGTCCTccctaatacactgttccctgtatttatATCTTATCAAAAGTATTGCtattaaaatgagattttatcCATAACGCAAATGCTGTTTACATATGACTAATCAAAATGATATAattagcattcatgttgttattg
>TCONS_00060511
AATGCTGTCAATGTACAGACATGAACCGAGCTCAGCGAGCAATAATCAAATCAAAGCTTTTTATTCTCCGCGATTAACACTTAGTTTTTTCCGTTTTCCGCTAATAGGTTCAACACAATTTTTCCACCTTAACCGTCGTTTTGGAAAACAAAATCGTTCAATCGTTTGCGCTGGATCTTTCTTGCCAGAAGATGTGTGTGGAGAGCGATGGATGTGAAATCGAGGGGTGCAGCAGTTCGGATGAGGTGCACACGCTGTCTGGAAGCATGAGTCCGGCTCTTAAATCCAGAGATCTGCATCACTGCAGACCTGGGCAGAAATTCCATGCCGCATTACTCCGATGCCGGACTCCGCTTGTAGCCGCCGGGATTCTGAGTTTTGGAAATGTGCTCAATTACATGGACAGATACACCGTAGCAGGTGTCCTGCTTGACATACAGAAACAATTCAAAGTTGGTGACAGCAGTGCGGGCTTGCTGCAAACAGTCTTCATCTGCAGTTTCATGGTGGCCGCCCCCATTTTTGGTTACCTGGGGGATCGCTTCAACAGAAAGATCATCCTGAGCTGTGGAATCTTTTTCTGGTCCGCTGTGACGCTGCTAAGCTCTTTCATTACCAAAGAATATTACTGGTTGTTAGTGCTGTCCAGATGCTTGGTGGGTATTGGAGAATCAAGCTACTCATCTATCTCTCCGACTATCATCGGAGACCTGTTCACGAACAACAAAAGGACTGTGATGCTCTCTGTCTTCTACCTGGCCATCCCACTGGGAAGCGGTCTGGGCTACATCCTGGGATCAATTGCTAAAGATGCTGGAGGGCATTGGTACTGGGCACTGAGGGTTTCTCCTATGTTGGGTCTGACTGCTGGGACGCTCATCCTCATCTTTGTCTCAGAACCGAAGAGAGGAAGCGCTGACCAACCTGGTGGACGATTAAAGACACGCACTTCCTGGGTCTGTGACATGAAAGCTCTCGCCAAAAATCGTAGTTATGTATTTTCATCTCTGGCATCGGCTGCTGTGTCGTTTGCCACGGGGGCATTTGGGATCTGGATCCCACAGTACCTGGTCAGAGCTCAGGTGGTGCAAAAGTCAGCAGAGAGCTGCACATATCAACCCTGCAGCAGCAGAGACAGTTTAATATTTGGAGCCATCACATGTGTGACGGGGCTGCTGGGAGTGGTGATCGGTGCTGTGACCACACGACTTTGCCGTCAGAAGACGGAGCGTGCCGACCCGCTGGTGTGTGCGGTCAGCATGCTGGGTTCTGCCATCTTCATCTGCCTCATCTTTGTTGTGGCCAAGAAGAGCATAGTTGGAGCTTATCCCTGGTCAACATATCTCTCAAAACCCTGTCAGAACAACCACTTGAACGATCGAATTCCCCTGCACCCAAAGATCTCCAAACACACTGTCTCATCTGGTTTGACCCCAGCAGCTGCTGTCAGCGGCAGGACAGACCATCCACATTCTGTCAAGTCACTAAGATTAGTGGCCATATCGAATACTTGTGTCTCAATCGGCCATAAGCACCTTGAAAATCCAGACCAGACACTTCGGGATATCAGTTCATTTGTGTGGGAATGCCGAAGCCAGTTAGTCTGTTCTCGTGGGATTTATGTTGTCATACCCACTAGAAGAGCCACTGCTGTTGCCTTCCAGGGCTTCACCTCGCACTTACTAGGGGATGCTGGGAGTCCGTACCTCATTGGCCTGATATCAGACTCGCTGCAGGAGAGCTACGCTACGTCAGAGATATGGCAGTTCCTGAGTTTGGGATATGCCCTCATGCTCTGCCCCTTTGTCATCGTTCTGGGGGGGATGTTCTTCCTGGCCACCGCCCTGTTCTTCCTTGATGATCGTGACAAAGCCGCCAAACAAGTAAACCAGCTTGCCCGGCCGCCGTCAACAGTTAAGGTTACCAAATGAGAAGAGGCTTCTGCAATGGGACAAAAGTGGAATGAAAACGCGGGCAAGTGGAGGGAAATAAAATTAGAAGGAATCAAACTAGCAGCTATCTCATATACGCACACTCGCCATCATCGTCATTTCTGCTTTTTCGTTCCACGAAGGCTGTTCGGTATTTGAGCCGCACCTTGCTTGCCCCGGTAAGCCCGTCAGCCAATCAGCAGCTGG
>TCONS_00060512
AGACATGAACCGAGCTCAGCGAGCAATAATCAAATCAAAGCTTTTTATTCTCCGCGATTAACACTTAGTTTTTTCCGTTTTCCGCTAATAGGTTCAACACAATTTTTCCACCTTAACCGTCGTTTTGGAAAACAAAATCGTTCAATCGTTTGCGCTGGATCTTTCTTGCCAGAAGATGTGTGTGGAGAGCGATGGATGTGAAATCGAGGGGTGCAGCAGTTCGGATGAGGTGCACACGCTGTCTGGAAGCATGAGTCCGGCTCTTAAATCCAGAGATCTGCATCACTGCAGACCTGGGCAGAAATTCCATGCCGCATTACTCCGATGCCGGACTCCGCTTGTAGCCGCCGGGATTCTGAGTTTTGGAAATGTGCTCAATTACATGGACAGATACACCGTAGCAGGTGTCCTGCTTGACATACAGAAACAATTCAAAGTTGGTGACAGCAGTGCGGGCTTGCTGCAAACAGGTAATTCTCTCATAATCCCATAATTATGTGGTTTTGCAATCATGcagtgagcacacacacactcatggacTTATATCAGTGACACGTGGTGGAAGCAAACACTGAAATCCACTAAGCTCCCTGCAGTTGAAGTGACAGGGGTAAcaaaggagagagagaaaaaacactaCGGATGATGTGCTCCAGCTTCACCTCTCCTTCCTAAAGCCAGTGTAATTGACTGTGCTGGAAGCACTTGTTTTGGGTTTAACAAAGCAGCGAACTGCAGTGGATTGGATTAAATGTTAACTGCCCGACACTGCAAAGACATTACATACATTTTCCATTTAACAGTATTAAAATGCCACAGTATGGTCTAGTGAAACAGGTACAAGGGGAAGCtgtaaaagtagttttttttagtCTGTCTGTTACAGGAAATTGTAAAGCCCAAATTATACTTTACTATTCTACGTATGCACATAAACGCATTGCCttcgcacttcagaatctcatgTGTCCAGTCTCTATGCTGTTTTGTGGatgtttgttgttgttcttgcctgtgaataaaaaaaactagGCCAGTTGTTGCAAACTaattactgaaaaataaaataaaataaaataaataaaattctaaaatatatttttaaatacattaaaataaaataataataaaaagttgataataatgataaaaataagaaaaaagaaaaaatataaaagaaatgaaaacaaaa

Function

symbol description
spns2 Predicted to enable transmembrane transporter activity. Acts upstream of or within several processes, including branching involved in blood vessel morphogenesis; embryonic organ development; and sphingosine-1-phosphate receptor signaling pathway. Predicted to be located in endosome membrane and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; cardiovascular system; intermediate cell mass of mesoderm; tail bud; and yolk. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Orthologous to human SPNS2 (sphingolipid transporter 2).

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0055085 transmembrane transport biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0001944 vasculature development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0003319 cardioblast migration to the midline involved in heart rudiment formation biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5843 Predicted to enable transmembrane transporter activity. Acts upstream of or within several processes, including branching involved in blood vessel morphogenesis; embryonic organ development; and sphingosine-1-phosphate receptor signaling pathway. Predicted to be located in endosome membrane and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; cardiovascular system; intermediate cell mass of mesoderm; tail bud; and yolk. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Orthologous to human SPNS2 (sphingolipid transporter 2).

Ensembl:

ensembl_id ENSDARG00000061017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060510 False 6001 mRNA 0.40 13 30802798 30924453
TCONS_00060511 False 2138 mRNA 0.50 13 30806796 30924363
TCONS_00060512 True 1192 mRNA 0.39 2 30890848 30924347

Neighbor

gene id symbol gene type direction distance location
XLOC_031156 ftr82 coding downstream 87573 30707133 ~ 30715225 (-)
XLOC_031155 ift22 coding downstream 98408 30702084 ~ 30704390 (-)
XLOC_031154 tcnba coding downstream 182173 30617915 ~ 30620625 (-)
XLOC_031153 tcnbb coding downstream 186897 30614532 ~ 30615901 (-)
XLOC_031152 c2cd2l coding downstream 214249 30537640 ~ 30588549 (-)
XLOC_031158 CR753844.1 coding upstream 4594 30929047 ~ 30930288 (-)
XLOC_031159 spns3 coding upstream 32528 30956981 ~ 30984271 (-)
XLOC_031160 cyb5d2 coding upstream 107696 31032149 ~ 31035198 (-)
XLOC_031161 NA coding upstream 157886 31082339 ~ 31113121 (-)
XLOC_031162 NA coding upstream 341821 31266274 ~ 31274665 (-)
XLOC_031147 BX294389.1 non-coding downstream 410206 30390893 ~ 30392592 (-)
XLOC_031140 NA non-coding downstream 751240 30036486 ~ 30051558 (-)
XLOC_031139 NA non-coding downstream 901695 29896636 ~ 29901103 (-)
XLOC_031136 NA non-coding downstream 1048459 29746319 ~ 29754339 (-)
XLOC_031133 NA non-coding downstream 1209277 29589820 ~ 29593521 (-)
XLOC_031165 NA non-coding upstream 750200 31674653 ~ 31676807 (-)
XLOC_031166 NA non-coding upstream 766637 31691090 ~ 31692364 (-)

Expression


Co-expression Network