XLOC_031162


Basic Information

Item Value
gene id XLOC_031162
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31266274 ~ 31274665 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062026
TGACATGtctttttcatatatataaaattatgtaTCCACAATTAATATTACCAAGGCGTTTACAGAGAATTCTTTCTCAGTAGTGGGTGCAAAGCTCCAGCCGGTTTGTGCGCAGGCAGAAAGACAGCTGTCCAGTCCGAGTGAATCATCTCAGGACCACGAATGGGGAGAAATCGACGACACTACAATCTCTTGTTTGCGCTCCTGATTGTCAACCTTTCCGAAGTGTCCACAACGAACAATCAAGCACGTTTCAGAGTGAAAACATTCAGTATCGTTTGATGAAAACGTTTCGCGGGAGAAGCACCAACAAAAGGCATTCAGTAACGTTAAGGAATATTACTCGAATCGGTTTTAAATATGGATTGAAATAGATACAAAGTGGACGTCCAACTTTCCGCGTAACATTTCAAATCTCTGGAGGCACAAATCCCACACCAAGCCCTTCAGGAGAACAACTTCCGAAGTCAGTAGGCTATATTGACTAGTGGACGCCACTCTGTGTAAACCACACAaatcaaacagacaaacaaaaacagaGAAACTGAAACTCCTCAGACATTCAAACCCAATTATAGTTGCAAAAAAATGATCATTAGCACAAATCTTATCTTTATTTTACAAGtcctaaactaaatttaaaagacACATAAACCCCTGCAACCTTTAAAACAAACTGTAACAATGAATAAACAACCGCCACTATTCTACAAAATAGTCTCAGTTAGGTGAACGCTGAAAGAAAATTCAAAAGAAGTTTTGCAACTGCTCTCTCCCGGGTGATGatgatttttcattatttaaaaaagaattaaatatactgtataggTTATTAATTACAGTAACAAGGTTCCATGCAATCaggtatttcttttttttcctgtacTGTACAAGAGTTCAAGAGATCAGTAGTTATTAGCAAGGCTGTACAAGCCCACACTTTCTATTGGTGCAGATGCTAGTGTGATGAATATGAGCGGCCATGTTGCCTAGACTTTTCACACTGCGCTTTTAGCATATTGACACCAGGCACAGGCGTAGCTGCTTTGCCAATTCGTCTGAAAACAGCACACCAGCATTACCCAACAGATCGATGAGGGCATATCAAACCCTTAACAGCAAAACTGACAAAGCTAAACCACCTGGGTTCTTTCAGTCGAATACATTAttactgtgttaaaaaaaaaaaaaaaaaagtagccaaGTTCATCAAGATTGCAAGAAAAGCACTAGCGGTAGAGAATCCTCCCTTTGTGGACACGACGTgttcatgatgatgatgatggaggatGAAAAACGTGCAAAAGAAAAAGCAATTCGGCAGCATTAAAGGAGCACGAAAAGCCTTGCTAGCAAGCAGCAAGCCAAAGTACATTCAAGTGAGACCCCTTTACTCCCTAAAGAGGGTGCGcgagtttgtgtctgtgtgtaggAGAGGGAAAATCAAAGCAGTCTCTGCAGGTAATGCTGCAAACCTGGACTGCCCTCAGTGAACAAAACCCTTTCTTTCCTCCTCTTCCCTCTCATCACTTTCGAAACCTGCAGTGGATAGTAATACTTACATCATGTGGCAGGTTGCACCATGTTTGGATTGAATTATTACTAGTGTTCAAGTGGAGTTCACTCTTTTACAGAATAGAGGAGGAAAAGTCTGAGGCACATTAGTTCACTTATTCGCTTACTGTTGTTACGGTTGTTGATTTCAATCGATTTCTGCGCagttttgaaatgttttacagTTAAAATTCACTCCTTGGCCTTCTATTTCACAATCCTAAACCGTAAGTTCTCAGTTTTCAGACTAAAACAATTATAATGGTCATGTGCAATACAAAGTATTTGCTGCCTGGTTTAGCCTTGtgtaaacagttatttaaaagaaacatccaaaagaagagaggaaaagagaaACTGGAGCGACCACTTAAAGAAACTGGCCATTCTGTCCGAACAAACATTCACACATTAAAAGACACCCAAACTGGCATCTTCATCCTCTCTTTAACATTTCTGAATCTATCTTTGTTGTTTATTGTACTTTCTGGCCAAATTATGATTAAATCCCGCTTGTTATTAACCCGTATTACCCAAATGTTCATCCTTAAACGCTCTTCCTCTCCAGTAAACCGCACTACTATGTACAGCAAGTGTGTGAAAGCTAAAAAGCAAGGTAAAAGAAAACATATGGACACACAACGGCTTGACATGATTGAATTAGGCCCATGCACATGcctacacgcacacaaacactcacgcctaaactctcaaacacacacaaagtaacAAACTACAAGCCCTGCTTGTTTTAGTGGTGGTTAGACATGCAGAGAAGACACATGATGAGAGATTTCTAGAGGACGAGTGATGTGTGTGCATGTCTTAAAAGCATGGAGGAAAAAGGCaggggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgtgtgcttGGAGGAAGTCATCCTAAAATTTCAGCTGCCGATTCTTCCTGTACCTGTCCTCCTCTTCACCTGCAGAGAGATAGAGAAATTATGAAGTGCCTCCAGGAGATGAAGAGCAAAATGCTGAGGTAATTCCAAATGGACAGACTGTAGGTTGAGAAAATACCTTTCAAAAGACGAGAGGGGATAGTTAAACTGCCGGAGGAGAAACAGATCagaagaaacaaagaaaaaaaatgacaatacagTCA
>TCONS_00062027
gtggctcactgcGTACGTCAGGGGACTTGAGACGCACAGAGGAGTTGACTGAGACGACGGAGTTCAAGTCTGATGAAGAATTGTTCCAGCAGGCCAGCAATAGTGGGTGCAAAGCTCCAGCCGGTTTGTGCGCAGGCAGAAAGACAGCTGTCCAGTCCGAGTGAATCATCTCAGGACCACGAATGGGGAGAAATCGACGACACTACAATCTCTTGTTTGCGCTCCTGATTGTCAACCTTTCCGAAGTGTCCACAACGAACAATCAAGCACGTTTCAGAGTGAAAACATTCAGTATCGTTTGATGAAAACGTTTCGCGGGAGAAGCACCAACAAAAGGCATTCAGTAACGTTAAGGAATATTACTCGAATCGGTTTTAAATATGGATTGAAATAGATACAAAGTGGACGTCCAACTTTCCGCGTAACATTTCAAATCTCTGGAGGCACAAATCCCACACCAAGCCCTTCAGGAGAACAACTTCCGAAGTCAGTAGGCTATATTGACTAGTGGACGCCACTCTGTGTAAACCACACAaatcaaacagacaaacaaaaacagaGAAACTGAAACTCCTCAGACATTCAAACCCAATTATAGTTGCAAAAAAATGATCATTAGCACAAATCTTATCTTTATTTTACAAGtcctaaactaaatttaaaagacACATAAACCCCTGCAACCTTTAAAACAAACTGTAACAATGAATAAACAACCGCCACTATTCTACAAAATAGTCTCAGTTAGGTGAACGCTGAAAGAAAATTCAAAAGAAGTTTTGCAACTGCTCTCTCCCGGGTGATGatgatttttcattatttaaaaaagaattaaatatactgtataggTTATTAATTACAGTAACAAGGTTCCATGCAATCaggtatttcttttttttcctgtacTGTACAAGAGTTCAAGAGATCAGTAGTTATTAGCAAGGCTGTACAAGCCCACACTTTCTATTGGTGCAGATGCTAGTGTGATGAATATGAGCGGCCATAGACTTTTCACACTGCGCTTTTAGCATATTGACACCAGGCACAGGCGTAGCTGCTTTGCCAATTCGTCTGAAAACAGCACACCAGCATTACCCAACAGATCGATGAGGGCATATCAAACCCTTAACAGCAAAACTGACAAAGCTAAACCACCTGGGTTCTTTCAGTCGAATACATTAttactgtgttaaaaaaaaaaaaaaaaaagtagccaaGTTCATCAAGATTGCAAGAAAAGCACTAGCGGTAGAGAATCCTCCCTTTGTGGACACGACGTgttcatgatgatgatgatggaggatGAAAAACGTGCAAAAGAAAAAGCAATTCGGCAGCATTAAAGGAGCACGAAAAGCCTTGCTAGCAAGCAGCAAGCCAAAGTACATTCAAGTGAGACCCCTTTACTCCCTAAAGAGGGTGCGcgagtttgtgtctgtgtgtaggAGAGGGAAAATCAAAGCAGTCTCTGCAGGTAATGCTGCAAACCTGGACTGCCCTCAGTGAACAAAACCCTTTCTTTCCTCCTCTTCCCTCTCATCACTTTCGAAACCTGCAGTGGATAGTAATACTTACATCATGTGGCAGGTTGCACCATGTTTGGATTGAATTATTACTAGTGTTCAAGTGGAGTTCACTCTTTTACAGAATAGAGGAGGAAAAGTCTGAGGCACATTAGTTCACTTATTCGCTTACTGTTGTTACGGTTGTTGATTTCAATCGATTTCTGCGCagttttgaaatgttttacagTTAAAATTCACTCCTTGGCCTTCTATTTCACAATCCTAAACCGTAAGTTCTCAGTTTTCAGACTAAAACAATTATAATGGTCATGTGCAATACAAAGTATTTGCTGCCTGGTTTAGCCTTGtgtaaacagttatttaaaagaaacatccaaaagaagagaggaaaagagaaACTGGAGCGACCACTTAAAGAAACTGGCCATTCTGTCCGAACAAACATTCACACATTAAAAGACACCCAAACTGGCATCTTCATCCTCTCTTTAACATTTCTGAATCTATCTTTGTTGTTTATTGTACTTTCTGGCCAAATTATGATTAAATCCCGCTTGTTATTAACCCGTATTACCCAAATGTTCATCCTTAAACGCTCTTCCTCTCCAGTAAACCGCACTACTATGTACAGCAAGTGTGTGAAAGCTAAAAAGCAAGGTAAAAGAAAACATATGGACACACAACGGCTTGACATGATTGAATTAGGCCCATGCACATGcctacacgcacacaaacactcacgcctaaactctcaaacacacacaaagtaacAAACTACAAGCCCTGCTTGTTTTAGTGGTGGTTAGACATGCAGAGAAGACACATGATGAGAGATTTCTAGAGGACGAGTGATGTGTGTGCATGTCTTAAAAGCATGGAGGAAAAAGGCaggggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgtgtgcttGGAGGAAGTCATCCTAAAATTTCAGCTGCCGATTCTTCCTGTACCTGTCCTCCTCTTCACCTGCAGAGAGATAGAGAAATTATGAAGTGCCTCCAGGAGATGAAGAGCAAAATGCTGAGGTAATTCCAAATGGACAGACTGTAGGTTGAGAAAATACCTTTCAAAAGACGAGAGGGGATAGTTAAACTGCCGGAGGAGAAACAGATCagaagaaacaaagaaaaaaaatgacaatacagTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062026 False 2720 lncRNA 0.40 2 31266274 31269164
TCONS_00062027 True 2733 lncRNA 0.41 3 31266274 31274665

Neighbor

gene id symbol gene type direction distance location
XLOC_031161 NA coding downstream 153153 31082339 ~ 31113121 (-)
XLOC_031160 cyb5d2 coding downstream 231076 31032149 ~ 31035198 (-)
XLOC_031159 spns3 coding downstream 282003 30956981 ~ 30984271 (-)
XLOC_031158 CR753844.1 coding downstream 335986 30929047 ~ 30930288 (-)
XLOC_031157 spns2 coding downstream 341821 30802798 ~ 30924453 (-)
XLOC_031163 p2rx1 coding upstream 164725 31439390 ~ 31470426 (-)
XLOC_031164 sh3glb2b coding upstream 366216 31640881 ~ 31689911 (-)
XLOC_031165 NA coding upstream 399988 31674653 ~ 31676807 (-)
XLOC_031166 NA coding upstream 416425 31691090 ~ 31692364 (-)
XLOC_031167 pip5kl1 coding upstream 418651 31693316 ~ 31712399 (-)
XLOC_031147 BX294389.1 non-coding downstream 873682 30390893 ~ 30392592 (-)
XLOC_031140 NA non-coding downstream 1214716 30036486 ~ 30051558 (-)
XLOC_031139 NA non-coding downstream 1365171 29896636 ~ 29901103 (-)
XLOC_031177 NA non-coding upstream 826619 32101284 ~ 32103326 (-)
XLOC_031178 BX004981.1 non-coding upstream 854817 32129482 ~ 32132230 (-)
XLOC_031179 NA non-coding upstream 860537 32135202 ~ 32136421 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G383067 NA non-coding NC_047621.1 CM018567.1 7905334 ~ 7909226 (+)
mexican tetra (Astyanax mexicanus) G305348 NA non-coding NW_019172844.1 APWO02000113.1 279485 ~ 297661 (+)