XLOC_031165


Basic Information

Item Value
gene id XLOC_031165
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31674653 ~ 31676807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062028
tgctgttaatttacggcaaaattttaacagtataatcCTGTTATTGTCAAAAGCAgtatgttgctgtttttttacgGTTTTTGAAATGACGTAGAcgaaatttaacattattttactgtttttatcacACCAATGTAAAAAAACAGCAATCAACAGTATTTTTTGAACAGAAGACGTCAGCCATTACATGTGGATTTTCATGCTTCTTTTAACTTTGACTTACTCGGTGAGTGCACctttatttagctaattttacACAAAATACACATTTGTGATTGCACATAGGCTAACTGGATGCTGATATTGTAACTTTTTTACATCTATTTTAGTTCTAAATCAGTGTCAATGTGCAAACTGCATCTGCATTGAGTGGAACTGGATTTCTGACACAGATATTTCCTGATTACATGGTAAGTCAGACTATGATAATTAAAAATGATATAGGCTATAAGCGTATCTACAAAGTCAGTATTTAAACATATGTAGCAACAAAGTAGTATTGATTTAGGTAGCATGATGAAAAGATTGTCATCTTATAGTTAATTTTAGCTTTAGCTTTTAAGAGCTACCTAATATGGTTTCAATGTAGGCTTTGATAAAACATTTTTCCCCTAATgctgtgtttaaaaatgttactGTTGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAactgttttatacagtatgtccTTTTCAGCGCTGAACCTGTGAACATGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTTCTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattattgtctatatGGTATTATTGTCCTAATaactgaaaatacaattaaaaaatgctaTGCATACATTATGGTTGTTAATTTTGTCTCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGAACTGTATTTTATTACTTATGCAACTAAAGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAattcttttaaacaaaacaaaatacacaaatacataaaataaatgttctgtCATATTTTACCCAAGCTTTCATTCACCTTTGgaaaacattatattaaattcACTAAATTACTCAATTTTAGTTGTTTAACACATCAGCTATGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTCACAATACACAGTATATACACGTTGATTTCAGTGGCTGTCCAGGCGTGTCCACAATCAACATTTTCTAATGCATTTATTGTGTTAAAAGAACAGGGCTTTGAGACTAAGTAAAATTATGTCAGCTTCCCTCACATATATTTTCAAATAGGCAGTAGAAAATATAATTTCATGTGACTgctgacattgtttttttcttttagatgttttaggaaaaaaaacaGGAAGCTACATTCATAAATGGATGATCAGTTTTGAGGGGCAAATAATCTGAGAGAGCATCCAGCCAAGTTTTCTGTCTGGTATAGCTGCTGTGTTTTCAACTTACGACATTTTCGATGTGGAGAACCAAGCTGAGGCTGCATGCACATTGGAATTAATTCAGAGGTTAGACGcttaaattcatatatttatttctctTCACATTATTATTGTATAAACTTTAACCCACACTAATTCTGAATGTGTGCACTTTTTTAGGAGCTTCATTGGTAAACCCTAAGGCTCCAAGAGTGGACACATCCTATCGAAGGGAATGGGGAAGGTCACCCACAAAATGAATTCAGTCAACACTAAGGTTGCCAGTTTACTTAAAGAAGCTAATGGACTTTGAGTTGGATGTCATATAAGtgtccccacacacacacacacacaccttacacATCCTCTTCACTAATGGCACTCATTTTATTGTGTTAGTCGCGTAATTTTTCAGGTGTATGTTCTTGAATACCTAAACTGTTCATtgcattcttttttatttcttaatgacTAATTCTGTAATTCACTCAGAAGTTTTCAGAGTAGTAATTGTTGGAGTAAATCTACTTGGTTTTCCATAGCCACTAATTTTGA

Function

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006703 estrogen biosynthetic process biological_process
GO:0051607 defense response to virus biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062028 True 2155 lncRNA 0.33 1 31674653 31676807

Neighbor

gene id symbol gene type direction distance location
XLOC_031163 p2rx1 coding downstream 204227 31439390 ~ 31470426 (-)
XLOC_031162 NA coding downstream 399988 31266274 ~ 31274665 (-)
XLOC_031161 NA coding downstream 561532 31082339 ~ 31113121 (-)
XLOC_031160 cyb5d2 coding downstream 639455 31032149 ~ 31035198 (-)
XLOC_031159 spns3 coding downstream 690382 30956981 ~ 30984271 (-)
XLOC_031166 NA coding upstream 14283 31691090 ~ 31692364 (-)
XLOC_031167 pip5kl1 coding upstream 16509 31693316 ~ 31712399 (-)
XLOC_031168 dpm2 coding upstream 37551 31714358 ~ 31716713 (-)
XLOC_031169 fam102ab coding upstream 46597 31723404 ~ 31773209 (-)
XLOC_031170 pkn3 coding upstream 153669 31830476 ~ 31857593 (-)
XLOC_031158 CR753844.1 non-coding downstream 744365 30929047 ~ 30930288 (-)
XLOC_031147 BX294389.1 non-coding downstream 1282061 30390893 ~ 30392592 (-)
XLOC_031140 NA non-coding downstream 1623095 30036486 ~ 30051558 (-)
XLOC_031177 NA non-coding upstream 424477 32101284 ~ 32103326 (-)
XLOC_031178 BX004981.1 non-coding upstream 452675 32129482 ~ 32132230 (-)
XLOC_031179 NA non-coding upstream 458395 32135202 ~ 32136421 (-)
XLOC_031181 BX004981.3 non-coding upstream 493363 32170170 ~ 32170286 (-)

Expression


Co-expression Network