XLOC_031172 (coro1cb)


Basic Information

Item Value
gene id XLOC_031172
gene name coro1cb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31880586 ~ 31904562 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060539
aaatgatcagacgAGTGGTACGACAGAGTAAATTCCGTCATGTGTTTGGTCAGGCGGTGAAGAATGACCAGTGCTATGATGACATTAGAGTTTCGCGTGTTACCTGGGACAGTGCCTTTTGCGCAGTAAACCCCAAATTCGTTGCTATTATTGTGGAGGCCAGTGGAGGTGGAGCTTTTCTCGTTCTACCTTTGCAAAAGACGGGTCGTATTGACAAGGCCTACCCCACTGTTTGTGGCCACACGGGCCCTGTGCTGGACATTGACTGGTGTCCGCACAATGATCATGTCATTGCCAGCGGCTCTGAAGACTGCACAGTAATGGTGTGGCAGATCCCAGAGAATGGCCTCACCTCAGCTCTTTCTGAGCCAGTCGTGGTGTTAGAGGGTCACTCCAAGAGGGTGGGCATCGTGACGTGGCATCCAACAGCCCGCAATGTCCTGCTAAGCGCAGGATGCGATAACCTCATCATAATCTGGAACGTGGGCACGGGTGAAGCTCTGATCAACCTGGAGGACATGCATCCTGACGTGATCTTTAGCGTCTGCTGGAGCCGCAACGGCAGCCTCATTTGCACCGCGTGCAAGGACAAGAAAGTGCGTGTAATTGACCCACGCAAGGGGAAGATCACTGCGGAGAAGGATAAAGCTCATGAAGGAGCACGGCCCATGAGGGCCATCTTCTTGGCTGATGGAAACGTCTTCACCACCGGCTTCAGTCGTATGAGCGAGCGGCAGCTGGCCTTATGGAATCCAAAAAATATGGAGGAGCCGATATCAGTGCATGAAATGGACACCAGCAATGGAGTGTTGCTTCCCTTCTATGACCCCGACACTAATGTTGTCTACCTGTGTGGAAAGGGTGACAGTAGTATCCGCTACTTCGAGATCACAGACGAGGCGCCATATGTGCACTACCTCAACACATTTTCCAGCAAGGAGCCCCAGAGGGGTATGGGATATATGCCGAAAAGAGGCCTAGATGTCAACAAGTGTGAGATAGCCAGATTTTATAAACTCCATGAAAGAAAGTGTGAGCCAATCATCATGACCGTCCCTAGAAAGTCAGACCTCTTCCAGGATGACCTCTATCCGGACACAGCGGGTCCAGATCCGGTGCTGGAGGCAGAGGAGTGGTTCGAAGGCAAGAATGGTGAACCGATCCTGATCTCGCTCAAACACGGTTATGTCCCGGGCAAGAACCGTGACCTCAAAGTAGTCAagaaaaatgtgctggataacaAGGCAACCAAGAAGGTGGAGGAGCCAACAACTCCTCAGAAACCTGCCTCTCCTCAGCTAACCAGAAAGAATGAAGTGAAGTTAGAGGAGCTGCTGCGAGAAGTCAAATCTCTGAGAGATCTGGTGACGCTGCAGGACAGGAGAATTGCCAAATTGGAGGAGCAGGTGTCCAAAGTGGCGATCTAAGACACTGCTGgcctgaaagagagagagagaaagagagagagagagagagattcgaATGGGCAGGGGGTTCAGTCACTGCCAAAATGTCTCAATTTGACTCGATCATTCCACTTGGTGTTTCTCACAAGGACAACATTCCAAGATggacttttactttttttgtcaAGTCTCCCCCAAGCATTCGCATAGCAGAAGCAAAATTGTGGCAATGAGTGCTCACTGGTTTTAACtgatgttttacattttgttacaaAAAAGAATTCgtactttttttgttattgtaacaTTATTTCCATGAGTATTCTGATATTAACCGCTATGTTACAGAGTGTTGTTGTATATACACATCagtatttctctttccttttttgttttgttttgttgtgttgccAAAATTGAGGTGATACACTCACCTCTCGTTTGATTTCTACTTTTATATGTTTTTCCCAGTTGTAGATAGTGGcttattacaaaaaaacaacaataattgaCATGTCATACTATTCAAAGTGGGACATCAGGAGAAAAGGCAGTGCTGTGTGGAAGGGATTGTGAAGGTACTTCAGATAAAACTGATAAAGATATACTAAATATTCATAACCATTAAAATGCGACATTTAGGATTTTAAAATAAGTTCATGAGACGATCAAGCATTAAGCACACTGTCATCTTCTCCACCGCCTGCTTGGAGATCGTTATAACTGATTATAAAGCATCCAACAAAACAGGGTTTTCTCCAAACACAACACAATCAGTTACAATAAAGCCAGAAGCAATAACGCAAATGTTGCCGAATGAATGTGAACGTAAACCTAAACCACTTGTACTTTAGCAAGTATTGTTCAGAATGCATTAATCATGCATATTtcttcacaaaaaaacaaaaacccacTGCTGTAACCTTATGGTAATTCTGAAATTACTGTTGCACCTCAGGAAATCAACCACTATTGAGTCAGAAACGTGGAATGGTCAACACTTGCCATCCGCATGGCGTTTGTTTTGCCCACAGAAGAAGTACCATCGTCTTATTTTAAATAGGAAATGGCTattttataagtattattattattatttgctgtcatcatgatcCACGTTCTCCAGTTTGCCCCACTTTCCAATTCTTCTCATGTTACAGAATATGGGCCTGACAGATGCTCTGATACGTGAAGTCGGCTTTTAGAGGCAGTGATGATGACCTGCGAGCTCTTCTGATgtacatgtactgtaaatgtaTTGGTGCCTCTATGTGTGTTTCTGGTTTTAGACAGAACTCCTCAGTTTTGACCGCTGCTGGAGGACAGGCATCCATCAGTCTGAGCACTTATCTGTGTCCTGAACAGTCTTGTGCATGCATTCCAAACttcacctaaaataaaaaaggtcGACTCTACAATAAACCCTTTCATTCATAATTCTTGAGGATGTCTGCGGTGTCATTTGTCATGAAAATAAACATCCAAACTTATATTTCCAACAATTTAGCATCTCATATGATCATTTTATGTCCGTACAATAtttggtaatactttattttgatggtccatttgagtattagtagactgtgctgaatatttattgatatgctccttcaacagacatttaactgactataagaaactttgcaagtacatgtcaacttactaaccccaacctaacagtctacttacaatctaatgagaattagttggtatgtagatgcaatgtaacttaaacaacaaatggaccatcaaaataaagtgtaacctactatttttatttgatgAGCAGCTCGACTGTATTACAAAATAAACTCCTCCGGGTTTAAGTAAGACTTTAATCTCTTAAATGCGTGTTTATGGCCAGGTTTATTATTCTGCAGTCAAGAAAGAAGACGTACAACATCCTTCTTCCTCAATTCTCTCAAGATTTGCCAAGACGCTTTTAAAGCAGATGTTTTTACAATCTTGTATGTCTTGACAAGTCATTAAAAGTCCAAGATCTCTCAAAAGGGCTGCCATATtgaaaactaatttttaaaacacctatataataaattacatattgaCACCATACAATTTATTGGGTTAACTGGTCCACCCATATgacattgcattttaaaaacctttaaatcttattttaaccTCATCTAATACTGACAAACTATGACGCTTTTTGTGTGTACACTCAAACAAAGAGATTTTTATTTAgacttaaatataaaatgtatgttggtgccagtagcctagtggtactATCGTGCCCACGGCGAACCGAGTTTGATTTccggcttgaggtcctttgccgattcttcccctttctctgctcccaatgctttcctatCTGAATTCCCTACTGAATTCCCTACGgtagaagaataataaataaataaaaataaataaaatgtacaatgcatctggaaagtattcttAGGACATttcctttttccacatttgttacagccttattccaaaattgattcaattgatttatttcctcaaaattccacacacaatgccccataatgacaatgtaaaaaaagtttttttttttttttttaattgttgcaaatttgttaaaaataaaaaaaaggcatacacctgtctatataaggtcccagggttgacagtgcacgTCAAAGCACAatccaagcatgaagacaaagaaattgtctgtagacttccaagacaggattgtctggaggcacaaggctggggaaggttacagaaaaatttctgctgctatgatagttccaatgagcacagtggcctccatcatgcgtaggtggaagatgtttgggatcaccaggactcttcctagagctggccggccatctaagctgatcgggggagaagggccttagtcagggaggtgatcaataaccctatggtcactctgtctgagctccagcgttcttctgtggagagaggaaaaacttacagaagaacaaccatctgtgtagcaatccaccaatcaagcctgtatggtagagtggccagacggaagccattTCCTGCCTGGGATTTGCCAAAAGCCATCTGAAGAACTCCCAGACCATAAGAAATAAAATTCTTTGGTCTGAAGAGATTAAATTTGAACTCATTGTATTACatttgaagaaaaccaggcaccgctcatcaccaggctaataccatccctacagtgaagcatggtgttggcagcatcatgctgtggggatgtttttcagcagcagaaactggaagactagtagggatagagggaaagatgaatgcagcaatgtacagagaaatgctaaatgaaaacctgctttagagtgctcttgaccttagACTGAGGCGACGGTCTTCCAGCagcacaatgacccaaagcacaccattaaaatatcaatggagtggcttcacaacaactcggtgaatgtttttgagtggcccagccagagcccagacctaaatcctattgaacatctctaaagagacatctgaaaatggctgtacaatgCCACTTCCCATCAAACccgatagagcttgagaggaactgcaaagagaaatggccaaaaattcccaaagacaggtgtgccaagattgtggcatcatattaaaaagacttgaagctgtaattgctgccaaaggtgcatcaacaaatgattgagcaaaggctgtgaatacttatgtacatgtgatttttcaggttttttatttttaataaatttgcaacaattaaaaaaaaaaatctgttttgacgTTGTCATTATAGGCTGTTGAGtgtggaattttgaggaaataaataaatttaatccattttggaataaggctgtaacataaaaaatgtggaaaaaaagaagcactataaatactttccagatgcactgtattttGATTACATATAAAAATTTCTATCCATTTAGATtacatattttaacaaaattgAACTAAAAAACTTGATATGATGGATATTTGTAAGTTAAACATAAATGGAAC
>TCONS_00060540
GGGCGTTTTCTCCCGTTCATTCAGAATAAAGGAGAGAGGAGGGAAGCTATTGTGGCTAGCCGCAATTCACTGAGACAGTCACCAGCACATCTGAATCCgcagaaaaattaaattaatgcgTTGAATTTGACTCTCTGAGAGGCGTAGTACTGATAAAGaaatgatcagacgAGTGGTACGACAGAGTAAATTCCGTCATGTGTTTGGTCAGGCGGTGAAGAATGACCAGTGCTATGATGACATTAGAGTTTCGCGTGTTACCTGGGACAGTGCCTTTTGCGCAGTAAACCCCAAATTCGTTGCTATTATTGTGGAGGCCAGTGGAGGTGGAGCTTTTCTCGTTCTACCTTTGCAAAAGACGGGTCGTATTGACAAGGCCTACCCCACTGTTTGTGGCCACACGGGCCCTGTGCTGGACATTGACTGGTGTCCGCACAATGATCATGTCATTGCCAGCGGCTCTGAAGACTGCACAGTAATGGTGTGGCAGATCCCAGAGAATGGCCTCACCTCAGCTCTTTCTGAGCCAGTCGTGGTGTTAGAGGGTCACTCCAAGAGGGTGGGCATCGTGACGTGGCATCCAACAGCCCGCAATGTCCTGCTAAGCGCAGGATGCGATAACCTCATCATAATCTGGAACGTGGGCACGGGTGAAGCTCTGATCAACCTGGAGGACATGCATCCTGACGTGATCTTTAGCGTCTGCTGGAGCCGCAACGGCAGCCTCATTTGCACCGCGTGCAAGGACAAGAAAGTGCGTGTAATTGACCCACGCAAGGGGAAGATCACTGCGGAGAAGGATAAAGCTCATGAAGGAGCACGGCCCATGAGGGCCATCTTCTTGGCTGATGGAAACGTCTTCACCACCGGCTTCAGTCGTATGAGCGAGCGGCAGCTGGCCTTATGGAATCCAAAAAATATGGAGGAGCCGATATCAGTGCATGAAATGGACACCAGCAATGGAGTGTTGCTTCCCTTCTATGACCCCGACACTAATGTTGTCTACCTGTGTGGAAAGGGTGACAGTAGTATCCGCTACTTCGAGATCACAGACGAGGCGCCATATGTGCACTACCTCAACACATTTTCCAGCAAGGAGCCCCAGAGGGGTATGGGATATATGCCGAAAAGAGGCCTAGATGTCAACAAGTGTGAGATAGCCAGATTTTATAAACTCCATGAAAGAAAGTGTGAGCCAATCATCATGACCGTCCCTAGAAAGTCAGACCTCTTCCAGGATGACCTCTATCCGGACACAGCGGGTCCAGATCCGGTGCTGGAGGCAGAGGAGTGGTTCGAAGGCAAGAATGGTGAACCGATCCTGATCTCGCTCAAACACGGTTATGTCCCGGGCAAGAACCGTGACCTCAAAGTAGTCAagaaaaatgtgctggataacaAGGCAACCAAGAAGGTGGAGGAGCCAACAACTCCTCAGAAACCTGCCTCTCCTCAGCTAACCAGAAAGAATGAAGTGAAGTTAGAGGAGCTGCTGCGAGAAGTCAAATCTCTGAGAGATCTGGTGACGCTGCAGGACAGGAGAATTGCCAAATTGGAGGAGCAGGTGTCCAAAGTGGCGATCTAAGACACTGCTGgcctgaaagagagagagagaaagagagagagagagagagattcgaATGGGCAGGGGGTTCAGTCACTGCCAAAATGTCTCAATTTGACTCGATCATTCCACTTGGTGTTTCTCACAAGGACAACATTCCAAGATggacttttactttttttgtcaAGTCTCCCCCAAGCATTCGCATAGCAGAAGCAAAATTGTGGCAATGAGTGCTCACTGGTTTTAACtgatgttttacattttgttacaaAAAAGAATTCgtactttttttgttattgtaacaTTATTTCCATGAGTATTCTGATATTAACCGCTATGTTACAGAGTGTTGTTGTATATACACATCagtatttctctttccttttttgttttgttttgttgtgttgccAAAATTGAGGTGATACACTCACCTCTCGTTTGATTTCTACTTTTATATGTTTTTCCCAGTTGTAGATAGTGGcttattacaaaaaaacaacaataattgaCATGTCATACTATTCAAAGTGGGACATCAGGAGAAAAGGCAGTGCTGTGTGGAAGGGATTGTGAAGGTACTTCAGATAAAACTGATAAAGATATACTAAATATTCATAACCATTAAAATGCGACATTTAGGATTTTAAAATAAGTTCATGAGACGATCAAGCATTAAGCACACTGTCATCTTCTCCACCGCCTGCTTGGAGATCGTTATAACTGATTATAAAGCATCCAACAAAACAGGGTTTTCTCCAAACACAACACAATCAGTTACAATAAAGCCAGAAGCAATAACGCAAATGTTGCCGAATGAATGTGAACGTAAACCTAAACCACTTGTACTTTAGCAAGTATTGTTCAGAATGCATTAATCATGCATATTtcttcacaaaaaaacaaaaacccacTGCTGTAACCTTATGGTAATTCTGAAATTACTGTTGCACCTCAGGAAATCAACCACTATTGAGTCAGAAACGTGGAATGGTCAACACTTGCCATCCGCATGGCGTTTGTTTTGCCCACAGAAGAAGTACCATCGTCTTATTTTAAATAGGAAATGGCTattttataagtattattattattatttgctgtcatcatgatcCACGTTCTCCAGTTTGCCCCACTTTCCAATTCTTCTCATGTTACAGAATATGGGCCTGACAGATGCTCTGATACGTGAAGTCGGCTTTTAGAGGCAGTGATGATGACCTGCGAGCTCTTCTGATgtacatgtactgtaaatgtaTTGGTGCCTCTATGTGTGTTTCTGGTTTTAGACAGAACTCCTCAGTTTTGACCGCTGCTGGAGGACAGGCATCCATCAGTCTGAGCACTTATCTGTGTCCTGAACAGTCTTGTGCATGCATTCCAAACttcacctaaaataaaaaaggtcGACTCTACAATAAACCCTTTCATTCATAA
>TCONS_00060541
GGAGGGAAGCTATTGTGGCTAGCCGCAATTCACTGAGACAGTCACCAGCACATCTGAATCCgcagaaaaattaaattaatgcgTTGAATTTGACTCTCTGAGAGGCGTAGTACTGATAAAGACGGGTCGTATTGACAAGGCCTACCCCACTGTTTGTGGCCACACGGGCCCTGTGCTGGACATTGACTGGTGTCCGCACAATGATCATGTCATTGCCAGCGGCTCTGAAGACTGCACAGTAATGGTGTGGCAGATCCCAGAGAATGGCCTCACCTCAGCTCTTTCTGAGCCAGTCGTGGTGTTAGAGGGTCACTCCAAGAGGGTGGGCATCGTGACGTGGCATCCAACAGCCCGCAATGTCCTGCTAAGCGCAGGATGCGATAACCTCATCATAATCTGGAACGTGGGCACGGGTGAAGCTCTGATCAACCTGGAGGACATGCATCCTGACGTGATCTTTAGCGTCTGCTGGAGCCGCAACGGCAGCCTCATTTGCACCGCGTGCAAGGACAAGAAAGTGCGTGTAATTGACCCACGCAAGGGGAAGATCACTGCGGAGAAGGATAAAGCTCATGAAGGAGCACGGCCCATGAGGGCCATCTTCTTGGCTGATGGAAACGTCTTCACCACCGGCTTCAGTCGTATGAGCGAGCGGCAGCTGGCCTTATGGAATCCAAAAAATATGGAGGAGCCGATATCAGTGCATGAAATGGACACCAGCAATGGAGTGTTGCTTCCCTTCTATGACCCCGACACTAATGTTGTCTACCTGTGTGGAAAGGGTGACAGTAGTATCCGCTACTTCGAGATCACAGACGAGGCGCCATATGT
>TCONS_00060542
ATTGCACCTGACTACGATAACTTGATAGAAACCGCAGATGACGAAGAACTGAAAGAAATGGATATGTCTCAGCTGAGgccaatattaaaaaagaaagcaaaaagaaAGGGCCCACCACCACCTATACCAAAGAAACCTCAAAATCCATTTGTTAAGACAGACACGGAGCAGATCCGAGCAAGCAAAGACTCTGAATTTGAAAATGTGGATCTTCCTTTGGAATATGGCAGACGTGACTCTGAAAGCTTCATGATGGACGTTGAAGATGAAGAGGACTGTAAGCCCACCGCAGCCTTAACAAGACATCTTCAAGCTGCCTGTTCTGCTTCAGAGGAAAATGATCTGTCCAGATTCAGACCCGTATCCGAACTCATCAGAGACAGCAACAAAATCCATGAGAAAGTGATACATCACAGCAGGACAAACATAATGGAAGCCAGGCCAGATGTGACTGCAGGATGCCAGAATCTAAAAGTATCGCAGATGAAGCAAGCCTTTGATGTACAAACATCTTCCCATAAAATGGAAAGAAGATCCTCACCAAAGAAAGaaatgatcagacgAGTGGTACGACAGAGTAAATTCCGTCATGTGTTTGGTCAGGCGGTGAAGAATGACCAGTGCTATGATGACATTAGAGTTTCGCGTGTTACCTGGGACAGTGCCTTTTGCGCAGTAAACCCCAAATTCGTTGCTATTATTGTGGAGGCCAGTGGAGGTGGAGCTTTTCTCGTTCTACCTTTGCAAAAG

Function

symbol description
coro1cb Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in actin cytoskeleton. Orthologous to several human genes including CORO1C (coronin 1C).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-418 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and cell migration. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in actin cytoskeleton. Orthologous to several human genes including CORO1C (coronin 1C).

Ensembl:

ensembl_id ENSDARG00000021193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060539 False 5366 mRNA 0.41 10 31880586 31897139
TCONS_00060540 False 3001 mRNA 0.45 11 31883109 31901505
TCONS_00060541 False 831 mRNA 0.52 7 31891443 31901468
TCONS_00060542 True 750 mRNA 0.44 2 31896940 31904562

Neighbor

gene id symbol gene type direction distance location
XLOC_031171 tmem119b coding downstream 4941 31872049 ~ 31875645 (-)
XLOC_031170 pkn3 coding downstream 22993 31830476 ~ 31857593 (-)
XLOC_031169 fam102ab coding downstream 107377 31723404 ~ 31773209 (-)
XLOC_031168 dpm2 coding downstream 163873 31714358 ~ 31716713 (-)
XLOC_031167 pip5kl1 coding downstream 168187 31693316 ~ 31712399 (-)
XLOC_031173 ssh1b coding upstream 10344 31914906 ~ 31928913 (-)
XLOC_031174 svopb coding upstream 27272 31931834 ~ 31942621 (-)
XLOC_031175 arpc5lb coding upstream 156319 32060881 ~ 32074637 (-)
XLOC_031176 cabp7b coding upstream 181886 32086448 ~ 32092856 (-)
XLOC_031177 NA coding upstream 196722 32101284 ~ 32103326 (-)
XLOC_031166 NA non-coding downstream 188222 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 203779 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 605921 31266274 ~ 31274665 (-)
XLOC_031161 NA non-coding downstream 767465 31082339 ~ 31113121 (-)
XLOC_031158 CR753844.1 non-coding downstream 950298 30929047 ~ 30930288 (-)
XLOC_031178 BX004981.1 non-coding upstream 224920 32129482 ~ 32132230 (-)
XLOC_031179 NA non-coding upstream 230640 32135202 ~ 32136421 (-)
XLOC_031181 BX004981.3 non-coding upstream 265608 32170170 ~ 32170286 (-)
XLOC_031187 NA non-coding upstream 437681 32342243 ~ 32357002 (-)

Expression


Co-expression Network