XLOC_031173 (ssh1b)


Basic Information

Item Value
gene id XLOC_031173
gene name ssh1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31914906 ~ 31928913 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060543
CCTGAGTGAAAGTTTCTTCATGGTAAAAGGGGCAGCTCTGTTTTTACAACAAGGCAGCAGTGCACAAGAGCCCAGAACACCCACACATCATAAAAACGCAGGGGATCTTCCACAGCATCTACAAGTAATGATAAACACCCTCCGCTCTGAAGATAGAATTAAATTAGTCGTTAGGTTAGAAAGTGGATGGACGGACCATGTGCGGTACATGGTAGTTGTCTACACAAACGGCCGCCAAGACACTGAAGAAAACATTCTACTCGGGATGGACTTCACGGATAAGGATAGGTAAATACCATGTACCTTTTGGAATTAACGACAGATATTGTGTCACAATTTTTTATTGACAGAAATGTTTGTGTGTTGTAGTAAAAGTTGCTCCATTGGGATGACTCTTCCGCTTTGGAGCGATACCAAGATTCATCTGGATGGAGATGGGGGTTTCAGCGTGAGCACAGCAGGAAGACTACATGTTTTTAAGCCTGTGTCAGTGCAGGCCATGTGGTCCGCACTGCAGGTGTTGCACAAAGCATGCGAGGTGTCCCGCAGGTACAACTATTTTCCAGGAGGAATGGCACTGACGTGGGTGGGCTATTACGAGAGCTGTATCTCCTCAGAGCAGAGCTGTATCAATGAGTGGAATGCAATGACAGATCTGGAGACGACCCGGCCTGATTCTCCAGTCATGTTTTCTGATCAgccaacagagagagaaagaacagAGTGTATGATCAAAACCAAACTCCGAAACCTAATGATGTTCCAGGACCTGGAGAATATTACTTCTAAGGAGATCCGAAATGAGCTGGAACAACATATGAGCTGCAACCTGAGGGAGTATAAAGAGTTTATTGACAATGAGATGCTGCTTATTCTGGGCCAGATGGACAAGGCTACGCTCATATTTGACCATCTGTACCTGGGCTCAGAGTGGAATGCATCCAACTTGGAGGAGCTTCAAGACTCTGGGGTTGGGTATATCCTCAATGTCACAAGAGAGATTGACAACTTTTTCCCAGGTACCTTTTGTTATTGTAATGTCCGTGTTTATGATGATGAGACTACAGATCTGCTGGCGCACTGGAACGAAACCTACAACTTCATAGTTAGAGCCAAGAAAAACGACTCTAAATGCCTAGTACACTGCAAGATGGGAGTGAGTCGCTCAGCATCTACTGTCATTGCATATGCCATGAAGGAGTATGGATGGTCACTTGAGAAGGCTTACAATTTTGTCAAACAGAAGAGGAATATAGCACAACCAAATCCAGCATTTATGAAACAGCTGGCCGAGTACGAGGGGATTTTAGATGCCAGCAAGCAGAGACACAATAAACTCTGGAAACCAGATGGGGATGAGTATTCACCAGAGGGTCTCCAGGCTTCTGCTGCCAGTGGTGATCAGACTCCTCAGTTTTCATTGCTGCACCCTGATCAGGAGGAGAGGGCTTGGGGCCACGGAGGAGCAAGTGCTTCCCCCTGCTGTGGAGAAGAGCCCACAGACCATCTCAATTACAACTACTACTTCCGGCGTCTCTCAGACACCGCTCTGGACAGCGAACCCTCCACGCCGGTCCGGGGTCCTCCACTTTTAGGCATGGAGAGGGTCTTTATTGAGATCGAAGACGTGGAGAGGGACGCGTTGCTTGACGATGAAGGTTTCCCCATGGCTCACTTGGGCCTTCCTGGGGAAGGCACAGCAGCTCAGACCTGTGGCCGACTGGAGCCTTTGGAGGACATGCGCTTGCGGCTGGAGTTTAGCACGGTGGAGGAGGAAGATGAGGAGGAAGCACAAAAGGAGGAGGCGGAGATGGCGGCCTTAGCTCGCGGCGAGGAGACGCCGAGGGAAGACGAGAGCCTGGCTAATTCGAACCGCTTTAACAACGAGAACGCCAACAACAGCAACAGGCTGGCTGGGAAGCGCAGCTGCCCTTCTGGCTTTGACGACAGTGCTAGCATTGGAAACCCCTTCAAAGTGAAGCCCTCATATCAGTCGTGCCGAGACTGCCTGCGCCTACCCAGTGGCCGCCGCTGCGAACGTCGCAACCATCGCCTTAACCTGCCACGCCACACAGGCCTGCCCAGTATCTCCATCCAGGCCCCTGGAGGACTCAAATTCCGTCCTGTCTCCATCAACAAGGTGCCTCCTCCTGTCCCTCTGCATCACATGAGCAGCGGGCACTGCCAATGCTTTCGCTGCTCCAGTCGGGTCAACTTGGACACTTACCGGAAGCAGCGGAGCTGCAAAGACCTTCCTCAGGTTTTGCCTTATTCCTTGGAGACTGAGGACAAAATGGAGGGGGAGGACGAGGGGAGCAAGGGGAGCTCAAGCAGTCCAACAGCTGAGCTCACTCTCCTGAAGCTCAGTCTGGGTGGTGAGAGGCCTGCGGCGGAGCTCAGTCAGGGGCCACACCTAGATGCACAGCACAGACCGGAGCCACTGTCCGAACAGATGGATGTGAGCGTAGAGGACAGTACCACAGAGGACATGGAGGTTGATGAGGGGAACATCATCCCCTATGTGCACCCCAGCTCCAGTGAACTCCAGCAAAGGTCTCCACCAGGCATGTCCCTGGTGCGCAGCTCCAGCAGCGACAGTCTTCAGAGAGTTCGAAGAGTTCAGCCGGGCTTGGTACGCCAGCGCACCCGAGAGATTGAGACCCGTGTGCGGCTTGCCGGACTGACGGTGTCCTCCCAACTCAAAAGGTCTAACTCGCTGGCCAAGCTAGGGGATTTGGCCATCTCCACAGAGGACCTCTCACTTTCTGCCACAGTCTCCACTGACTATGATGAGCAAGAGCCTGCTCTGTGTGTGCAGTCCTCCTGCTCTCCAAAGCTCTCTTTAACTCTGAAAAGCTGACTCAAAGATGTCAGAAATGCTTTCTCAGTGAGTCCTACAGCCATCGAGAGCGACCGTGGAGGCTGATGCTGCAAGTCACCTCATGAGAACAATCAGGCCAGGCTTGGACGTCTTTCCAGCAGCCCTTTACATAACTGCACTGCATTCTTCATGTGTCTGTCCGTGCTTTAACTAACATATATATTAAAGCATGCTCTGGCTTGGACCTTCATTAATGGCTTTGTTGATAGATACCGCTTTTCTTTGTCTTGCTGAAGGAAGCCCCACCTGTTAAGGTTTTAATATGAGTGCGGCCCATTTATAGGTTGTATAATCAGACCTGGGTAAATTCGTAATgattttcttccattttttttttaacgatgGTTAAATCTCCATTATTTACCTTTTAACACACATTTTTGTGCCAAttggtttgtatttttattaacacaAATACTACTGACATTTTGCCTGCCAAATTGTTTACCAGCTTATTTGGTGCACTATTGCAGATGAACCAATCATGGAGATCAGATCTGATTacttgagggggggggggggggtcaattCAAATGATTTAGATTATCATTACGGTTGAAATAAATCAGTAGGGTTTTGCAGTGCTTGTTTACTAATGACATTTCCAAAGCATAGAATTTGCTGGTTGGTGCAAAGAAGGTGGTAGGCAAtcttaatacttattattattattattatttttaaagttaatcACATAAAAACCGAACCAGATTTAGATTCTGACCATTTCAGCTGTggcttaataaaaatgtatactaGTTTGAGGCCAAAACTTTGAGCTTTATACACTTAAATCTATGATCTAAGCTCCCGTTAAAATGAAACTCTCTAGTCATGAAAATTTCAGTacattttttgttcagttttgcCTTTgggacctttaaaaaaaaattttcagcaAATTGTCGCACCACAAAAAGTAATTTAAGATGGCAGTTTAGTCTGAAAATCGTGATTATGTTCACTGTGTTATTCCACCTTGATAGTTACTCAATTCTTAAATGTTGCCATTTGCAAAAATGACATCAACAAAGCCCCATAATTATTGTCTATTTCCAGAGAAAAATTCCGACATGAATGTGGTTGGCTATTTGTCTCGCAGTTCTCTAATTTGCTTCTCAGCCGGTGTTTATAGGGTCAGTTCCATCTGAAATGTGCTACTAGAGCATAGCTCCTGTCATGTAATTTAGCTTAAGCTGTTTATTGTACAAATTGTAGCCTGTGATGTGCAAAAAGGCTTTAGCAGCAACACATTAGTACAATGCAGTCTTCAAGTTGATCAGAGGATGTTCAAATTAGTCACTATCGTCCTTTAAAAGGTCCTTTTAAAGTGTCTCCTATACGAAATGACACCTTGGCATCTGATAATGACAGTTAAGGTAATAAAAGGTGGAGAAGTGTGTTATCTTGTGGGTGTAGGGACTTGCTCAGTTTACCATGATGGTGTATGATATGTATAAAAGAAGTTGCAGATGACTTGTATTGGTTAAACTTGAccttaattattttttcatatatttatgtaatttataaaattattgttGTCTTTGTTGTCTactatgtttttcttttgttggtaaaaatgaaaatatgcaaaGTGGCCTGTGCAATAAGTGTACGCAAGAATTTGAAgagaatagtttttatttatacaatattgtCAAAAGTAACTAGTTTTATTTCAAGAATGAACGCGAAAGTCAgtgagaaaatgaaagaatgaaaatcAGATATGAGCTAGATTTTaatggaaatgttttattttctatcTGATCCTCGTGGGCTGAGTCACTTCTGTATTAAAGGATTGATATTCTGATGTTTAGTTTGAAACCTacttgatttgttttttaaatcgtCAGTTATTTGGAACTGAAAATTAGCAtctcatattttttatatatttatttatttattttgcccttATATttccaaaaatacatataatgtgGTCATAAAAGTATTTGCCAAAAGATTGCCAAAAAGATGGCCTCCCAAAGAGAGTAAAGTTGTCGTTTTGTTTCCGCTCATGGCTCGTCGTACTTCCTCCTGCTGCTGATTTCAGTACTAGAtgttttgtttcttcagacaTGCAAGTGCCTTACCTGTTGCCATTTGCAATCAGTTGTCTAAGGGTTGTTCGGTAAAACCGCTTTTTCATTGCGCTGAGGTTTTGTCTTCACCTGGTTGCGGTCTTTATAGAGCAAAGATTATTTTGAACAGATGCATATTCGTGGCTCATTCAAGTCTCTTTGTCTTTTTGGTTTTGATACTGCATTTCATATTTGAATCGAGGAGACCAAAGTCATTTAATTACTGTCATGTTGACATGTTAATATAGGCTAACAATAAAATCAACTGGAGAAACTAGAGGATTGTCTTTAGCCCTAACCTAACAGCTCTTAAAAGTGACTTGGAACATACACCGTCTGTAAATTGTACTTCATTTGACCATTTTAAGTTGTGCTGCACTGTTTTATAATGTACTGTACAGTTAATTAtagaaataaattgtttattgtcTGCATCAGATATGGACCGCTTTTTCATTCGTTCACTATaaccaattattaaaataaacaaatatgttttacacatcttTATTTATTCGATGAGTATAAGAGTTGTGTTTCCTGACCTTTGAGTACCTCACAGAAGGAACTCTTATTGAATTAGGCAAATGTGATTCTGACATCACAAGACCAGACACTGAAGCAGTTCAGTTCAACAGGCTACTGCTAAGTGTGTTTAGTGCCGTTCTGAGACGTTTCTGCTGCTTCAGTGCTGAGGATTTATTCTTCTGTTGGAATACATGAACACGGTGAGGTTGCCAGCTGTATTTCTATTGCGTATGTATTTGCCAGTAATGATTTCTGCTGTGTTGTAAAACAAAGCATCTACTGAAGACATAAATGGGTCAAAGACAACACGTCTCATTTTGTTGTCCACTTCAAATTTTGTATACATAGGAAGCATATTAAGTGTAAATAAAGTGTCTCAAATgacatttctgaaaataaaatgttcaaataataCTGATctg
>TCONS_00060544
CCAACCACTGACGGCGGTCCCGAATCACGGTCCATTATGTCTGACCACTAAATCAACGGTCCAGCCGGGAAGATAGAGAGCGCAGACCGCTGTTTATCGGCATCGTCGCGGCGTGAATGAGAATTTGCAGAACCGCCGAGTTGGATGACAAAGCCGATGATGGGTTTATCGCTCCGCTAAATAGATTTAATGCGCCTGTGAATGCATTAACCCCGTGGCtggcgagcgggcgggcgggcgcGGAACAGGAGATCTCGGCGTGTGCTGTGGGGAAGGGACCGGAGCGGATCGCCTGTGCGGTTTTGCTGAAGGCTCCGCAGCGCAGCCATGGCTCTGGTGACTCTGCAGCGCTCCCCGACACCCAGCGCCGCATCCTCAGCCAGCACCACCGCGGGGGAGGATGTCGGCAGTGAAGATGATCGAAAGGCAAACCTAAGCCTGAGTGAAAGTTTCTTCATGGTAAAAGGGGCAGCTCTGTTTTTACAACAAGGCAGCAGTGCACAAGAGCCCAGAACACCCACACATCATAAAAACGCAGGGGATCTTCCACAGCATCTACAAGTAATGATAAACACCCTCCGCTCTGAAGATAGAATTAAATTAGTCGTTAGGTTAGAAAGTGGATGGACGGACCATGTGCGGTACATGGTAGTTGTCTACACAAACGGCCGCCAAGACACTGAAGAAAACATTCTACTCGGGATGGACTTCACGGATAAGGATAGTAAAAGTTGCTCCATTGGGATGACTCTTCCGCTTTGGAGCGATACCAAGATTCATCTGGATGGAGATGGGGGTTTCAGCGTGAGCACAGCAGGAAGACTACATGTTTTTAAGCCTGTGTCAGTGCAGGCCATGTGGTCCGCACTGCAGGTGTTGCACAAAGCATGCGAGGTGTCCCGCAGGTACAACTATTTTCCAGGAGGAATGGCACTGACGTGGGTGGGCTATTACGAGAGCTGTATCTCCTCAGAGCAGAGCTGTATCAATGAGTGGAATGCAATGACAGATCTGGAGACGACCCGGCCTGATTCTCCAGTCATGTTTTCTGATCAgccaacagagagagaaagaacagAGTGTATGATCAAAACCAAACTCCGAAACCTAATGATGTTCCAGGACCTGGAGAATATTACTTCTAAGGAGATCCGAAATGAGCTGGAACAACATATGAGCTGCAACCTGAGGGAGTATAAAGAGTTTATTGACAATGAGATGCTGCTTATTCTGGGCCAGATGGACAAGGCTACGCTCATATTTGACCATCTGTACCTGGGCTCAGAGTGGAATGCATCCAACTTGGAGGAGCTTCAAGACTCTGGGGTTGGGTATATCCTCAATGTCACAAGAGAGATTGACAACTTTTTCCCAGGTACCTTTTGTTATTGTAATGTCCGTGTTTATGATGATGAGACTACAGATCTGCTGGCGCACTGGAACGAAACCTACAACTTCATAGTTAGAGCCAAGAAAAACGACTCTAAATGCCTAGTACACTGCAAGATGGGAGTGAGTCGCTCAGCATCTACTGTCATTGCATATGCCATGAAGGAGTATGGATGGTCACTTGAGAAGGCTTACAATTTTGTCAAACAGAAGAGGAATATAGCACAACCAAATCCAGCATTTATGAAACAGCTGGCCGAGTACGAGGGGATTTTAGATGCCAGCAAGCAGAGACACAATAAACTCTGGAAACCAGATGGGGATGAGTATTCACCAGAGGGTCTCCAGGCTTCTGCTGCCAGTGGTGATCAGACTCCTCAGTTTTCATTGCTGCACCCTGATCAGGAGGAGAGGGCTTGGGGCCACGGAGGAGCAAGTGCTTCCCCCTGCTGTGGAGAAGAGCCCACAGACCATCTCAATTACAACTACTACTTCCGGCGTCTCTCAGACACCGCTCTGGACAGCGAACCCTCCACGCCGGTCCGGGGTCCTCCACTTTTAGGCATGGAGAGGGTCTTTATTGAGATCGAAGACGTGGAGAGGGACGCGTTGCTTGACGATGAAGGTTTCCCCATGGCTCACTTGGGCCTTCCTGGGGAAGGCACAGCAGCTCAGACCTGTGGCCGACTGGAGCCTTTGGAGGACATGCGCTTGCGGCTGGAGTTTAGCACGGTGGAGGAGGAAGATGAGGAGGAAGCACAAAAGGAGGAGGCGGAGATGGCGGCCTTAGCTCGCGGCGAGGAGACGCCGAGGGAAGACGAGAGCCTGGCTAATTCGAACCGCTTTAACAACGAGAACGCCAACAACAGCAACAGGCTGGCTGGGAAGCGCAGCTGCCCTTCTGGCTTTGACGACAGTGCTAGCATTGGAAACCCCTTCAAAGTGAAGCCCTCATATCAGTCGTGCCGAGACTGCCTGCGCCTACCCA

Function

symbol description
ssh1b Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH1 (slingshot protein phosphatase 1).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0003779 actin binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5909 Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH1 (slingshot protein phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000010031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060543 False 5924 mRNA 0.43 12 31914906 31926906
TCONS_00060544 True 2377 mRNA 0.52 15 31918809 31928913

Neighbor

gene id symbol gene type direction distance location
XLOC_031172 coro1cb coding downstream 10344 31880586 ~ 31904562 (-)
XLOC_031171 tmem119b coding downstream 39261 31872049 ~ 31875645 (-)
XLOC_031170 pkn3 coding downstream 57313 31830476 ~ 31857593 (-)
XLOC_031169 fam102ab coding downstream 141697 31723404 ~ 31773209 (-)
XLOC_031168 dpm2 coding downstream 198193 31714358 ~ 31716713 (-)
XLOC_031174 svopb coding upstream 2921 31931834 ~ 31942621 (-)
XLOC_031175 arpc5lb coding upstream 131968 32060881 ~ 32074637 (-)
XLOC_031176 cabp7b coding upstream 157535 32086448 ~ 32092856 (-)
XLOC_031177 NA coding upstream 172371 32101284 ~ 32103326 (-)
XLOC_031178 BX004981.1 coding upstream 200569 32129482 ~ 32132230 (-)
XLOC_031166 NA non-coding downstream 222542 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 238099 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 640241 31266274 ~ 31274665 (-)
XLOC_031161 NA non-coding downstream 801785 31082339 ~ 31113121 (-)
XLOC_031158 CR753844.1 non-coding downstream 984618 30929047 ~ 30930288 (-)
XLOC_031179 NA non-coding upstream 206289 32135202 ~ 32136421 (-)
XLOC_031181 BX004981.3 non-coding upstream 241257 32170170 ~ 32170286 (-)
XLOC_031187 NA non-coding upstream 413330 32342243 ~ 32357002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06770289_06776849 SSH1B, SSH1 coding CI01000339 null 6770085 ~ 6776849 (-)
bowfin (Amia calva) AMCG00018731 ssh1,LOC106584991,LOC102780175 coding CM030135.1 CM030135.1 19206055 ~ 19222946 (+)