XLOC_031176 (cabp7b)


Basic Information

Item Value
gene id XLOC_031176
gene name cabp7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32086448 ~ 32092856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060549
ATGCCAGTGCGTGCTGTGACTTCCAGGTTCATGTACAGGGGACTTTGCTCAATTCCAGATATCCTTTCCTACAGGGCTCCCGTCAGCCTCCCCGAGGATGAAGTGGAGGAGATCCGTGAAGCCTTTAAGGTGTTTGACCGTGATGGGAACGGATTCATCTCCAAACAGGAGCTAGGAGTGGCCATGCGGTCTCTTGGCTACATGCCAAATGAAGTGGAGCTGGAGGTGATCATTCAAAGACTGGACATGGACGGTGACGGTCAGGTTGACTTTGAAGAGTTTGTAGCGCTCCTCGGACCAAAGCTGTCTTCAGCTGGTATGCCAGACCGCTTCCACGGAGCTGAATTTGACTCCATATTCTGGAAGTGTGACATGCAAAAGCTAACTGTGGACGAGCTGAAGAGACTCCTGTATGAGACCTTCTGTGACCATTTGACTATGAAAGACATCGAGAACATCATCATGACTGAGGAGAGTCACTTAAACAGCCCGGAGTGCCAAGTAGATATTGACAGTAATCCCATGCAACAAGTCAAGCACACCTGTGTGCGAAAGAGCTTGATTTGTGCCTTCGCCATCGCGTTCATCATCAGCGTCATGCTCATCGCAGCCAATCAGATGCTTCGAAGAGGAATGAAATGA
>TCONS_00060548
ATGCCAGTGCGTGCTGTGACTTCCAGGTTCATGTACAGGGGACTTTGCTCAATTCCAGATATCCTTTCCTACAGGGCTCCCGTCAGCCTCCCCGAGGATGAAGTGGAGGAGATCCGTGAAGCCTTTAAGGTGTTTGACCGTGATGGGAACGGATTCATCTCCAAACAGGAGCTAGGAGTGGCCATGCGGTCTCTTGGCTACATGCCAAATGAAGTGGAGCTGGAGGTGATCATTCAAAGACTGGACATGGACGGTGACGGTCAGGTTGACTTTGAAGAGTTTGTAGCGCTCCTCGGACCAAAGCTGTCTTCAGCTGGTATGCCAGACCGCTTCCACGGAGCTGAATTTGACTCCATATTCTGGAAGTGTGACATGCAAAAGCTAACTGTGGACGAGCTGAAGAGACTCCTGTATGAGACCTTCTGTGACCATTTGACTATGAAAGACATCGAGAACATCATCATGACTGAGGAGAGTCACTTAAACAGCCCGGAGTGCCAAGTAGATATTGACAAAAGTCCCATGCAACAAGTCAAGCACACCTGTGTGCGAAAGAGCTTGATTTGTGCCTTCGCCATCGCGTTCATCATCAGCGTCATGCTCATCGCAGCCAATCAGATGCTTCGAAGAGGAATGAAATGA

Function

symbol description
cabp7b Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; dorsal thalamus; and tegmentum. Orthologous to human CABP7 (calcium binding protein 7).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-366 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; dorsal thalamus; and tegmentum. Orthologous to human CABP7 (calcium binding protein 7).

Ensembl:

ensembl_id ENSDARG00000060846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060549 False 642 mRNA 0.50 5 32086448 32092856
TCONS_00060548 True 642 mRNA 0.50 5 32086448 32092856

Neighbor

gene id symbol gene type direction distance location
XLOC_031175 arpc5lb coding downstream 11811 32060881 ~ 32074637 (-)
XLOC_031174 svopb coding downstream 143827 31931834 ~ 31942621 (-)
XLOC_031173 ssh1b coding downstream 157535 31914906 ~ 31928913 (-)
XLOC_031172 coro1cb coding downstream 181886 31880586 ~ 31904562 (-)
XLOC_031171 tmem119b coding downstream 210803 31872049 ~ 31875645 (-)
XLOC_031177 NA coding upstream 8428 32101284 ~ 32103326 (-)
XLOC_031178 BX004981.1 coding upstream 36626 32129482 ~ 32132230 (-)
XLOC_031179 NA coding upstream 42346 32135202 ~ 32136421 (-)
XLOC_031180 m17 coding upstream 62285 32155141 ~ 32158242 (-)
XLOC_031181 BX004981.3 coding upstream 77314 32170170 ~ 32170286 (-)
XLOC_031166 NA non-coding downstream 394084 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 409641 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 811783 31266274 ~ 31274665 (-)
XLOC_031161 NA non-coding downstream 973327 31082339 ~ 31113121 (-)
XLOC_031158 CR753844.1 non-coding downstream 1156160 30929047 ~ 30930288 (-)
XLOC_031187 NA non-coding upstream 249387 32342243 ~ 32357002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06883625_06889375 CABP7, CABP7B coding CI01000339 null 6883055 ~ 6890499 (-)
bowfin (Amia calva) AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding CM030135.1 CM030135.1 17933745 ~ 17959525 (+)