XLOC_031177


Basic Information

Item Value
gene id XLOC_031177
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32101284 ~ 32103326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061538
gtgtgggggttcagtttgctagcgctaacttagctaaagttagctcacctaagttatagcagcacattaaggatggatattaaatgcagaaacgtatgcaacagttaagtagtgtgtgtttaacgtaagagaaagtataacttaaagtttgtgttttagagatttagtccataagttttttaatgctgcatagtgaataaattacagatttacaatttattttaacttaaattacatttactactgatgtttacagaaccatttaaattgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcggctgcccacgggaaaaatttgccatcagcccaacaaagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatctttatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtatgtgtagccacattaatggcctattttgtagtcactattaaaaggaacatcgattgatattgaa
>TCONS_00061539
atttattagagcagctgtcgatgtgggcaggtgttcataaaacgtgattttaatagtttggcgtgactcctttttcattgcccgggatttagcaggcagacgcagcttctgcaatggtcgacattaattgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcggctgcccacgggaaaaatttgccatcagcccaacaaagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatctttatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtatgtgtagccacattaatggcctattttgtagtcactattaaaaggaacatcgattgatattgaa

Function

GO:

id name namespace
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061538 False 745 lncRNA 0.35 2 32101284 32102880
TCONS_00061539 True 593 lncRNA 0.40 3 32101284 32103326

Neighbor

gene id symbol gene type direction distance location
XLOC_031176 cabp7b coding downstream 8428 32086448 ~ 32092856 (-)
XLOC_031175 arpc5lb coding downstream 26647 32060881 ~ 32074637 (-)
XLOC_031174 svopb coding downstream 158663 31931834 ~ 31942621 (-)
XLOC_031173 ssh1b coding downstream 172371 31914906 ~ 31928913 (-)
XLOC_031172 coro1cb coding downstream 196722 31880586 ~ 31904562 (-)
XLOC_031178 BX004981.1 coding upstream 26156 32129482 ~ 32132230 (-)
XLOC_031179 NA coding upstream 31876 32135202 ~ 32136421 (-)
XLOC_031180 m17 coding upstream 51815 32155141 ~ 32158242 (-)
XLOC_031181 BX004981.3 coding upstream 66844 32170170 ~ 32170286 (-)
XLOC_031182 myhz1.3 coding upstream 159173 32262499 ~ 32274383 (-)
XLOC_031166 NA non-coding downstream 408920 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 424477 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 826619 31266274 ~ 31274665 (-)
XLOC_031161 NA non-coding downstream 988163 31082339 ~ 31113121 (-)
XLOC_031158 CR753844.1 non-coding downstream 1170996 30929047 ~ 30930288 (-)
XLOC_031187 NA non-coding upstream 238917 32342243 ~ 32357002 (-)
XLOC_031193 NA non-coding upstream 413345 32516671 ~ 32536749 (-)

Expression


Co-expression Network