XLOC_031178 (BX004981.1)


Basic Information

Item Value
gene id XLOC_031178
gene name BX004981.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32129482 ~ 32132230 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060550
TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAGGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGgcaaagtttgttttgttttgtcaaatGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00062030
AAAACTTCACGACCCGCCCACATGACGCAGAACGCATGCAGAGCAACGACACCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAACAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAGGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGgcaaagtttgttttgttttgtcaaatGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00060553
AAAACTTCACGACCCGCCCACATGACGCAGAACGCATGCAGAGCAACGACACCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTAAATGATTTATCAATGACATGCTGCTTGGCAAATAATGGTGAATGAAGATGTTTATGTGATGCTATGCTAGACACACTTTTTGCTGAACACATACTGAAAATTTTACCTCACATGTTTTATGGAGGATTTCATTGCATAGGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAGACAAACAATTGATGTATTACAGAAAAATGAAGAATTCTAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATAAACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAACAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAGGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGgcaaagtttgttttgttttgtcaaatGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00060552
AAAACTTCACGACCCGCCCACATGACGCAGAACGCATGCAGAGCAACGACACCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGAAAAATGAAGAATTCTAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATAAACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAACAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAGGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGgcaaagtttgttttgttttgtcaaatGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00060551
TTTTTTAGAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAACAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAGGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGgcaaagtttgttttgttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060550 False 611 processed_transcript 0.41 2 32129482 32130516
TCONS_00062030 False 863 lncRNA 0.44 4 32129482 32132230
TCONS_00060553 False 1228 lncRNA 0.42 4 32129482 32132230
TCONS_00060552 False 1018 lncRNA 0.43 5 32129482 32132230
TCONS_00060551 True 662 processed_transcript 0.44 3 32129563 32131437

Neighbor

gene id symbol gene type direction distance location
XLOC_031177 NA coding downstream 26156 32101284 ~ 32103326 (-)
XLOC_031176 cabp7b coding downstream 36626 32086448 ~ 32092856 (-)
XLOC_031175 arpc5lb coding downstream 54845 32060881 ~ 32074637 (-)
XLOC_031174 svopb coding downstream 186861 31931834 ~ 31942621 (-)
XLOC_031173 ssh1b coding downstream 200569 31914906 ~ 31928913 (-)
XLOC_031179 NA coding upstream 2972 32135202 ~ 32136421 (-)
XLOC_031180 m17 coding upstream 22911 32155141 ~ 32158242 (-)
XLOC_031181 BX004981.3 coding upstream 37940 32170170 ~ 32170286 (-)
XLOC_031182 myhz1.3 coding upstream 130269 32262499 ~ 32274383 (-)
XLOC_031183 myhz1.2 coding upstream 149585 32281815 ~ 32293002 (-)
XLOC_031166 NA non-coding downstream 437118 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 452675 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 854817 31266274 ~ 31274665 (-)
XLOC_031161 NA non-coding downstream 1016361 31082339 ~ 31113121 (-)
XLOC_031187 NA non-coding upstream 210013 32342243 ~ 32357002 (-)
XLOC_031193 NA non-coding upstream 384441 32516671 ~ 32536749 (-)
XLOC_031194 NA non-coding upstream 428350 32560580 ~ 32737158 (-)

Expression


Co-expression Network