XLOC_031179


Basic Information

Item Value
gene id XLOC_031179
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32135202 ~ 32136421 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060555
GATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAACAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGTACACAACAGGCATCAGTTGGACACCTCAAACCCCCATgaggatccacacacacacacgctcagttTTAATGGGTAAAgtttagaagggatacagctgcagatactcgcatcattcattcattttccttcagcttagtccttcatttatcaggggttgccacagcgaaatgagccaccaactactctg
>TCONS_00060554
TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGTACACAACAGGCATCAGTTGGACACCTCAAACCCCCATgaggatccacacacacacacgctcagttTTAATGGGTAAAgtttagaagggatacagctgcagatactcgcatcattcattcattttccttcagcttagtccttcatttatcaggggttgccacagcgaaatgagccaccaactactctg

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060555 False 807 lncRNA 0.43 2 32135202 32136359
TCONS_00060554 True 796 processed_transcript 0.42 2 32135202 32136421

Neighbor

gene id symbol gene type direction distance location
XLOC_031178 BX004981.1 coding downstream 2972 32129482 ~ 32132230 (-)
XLOC_031177 NA coding downstream 31876 32101284 ~ 32103326 (-)
XLOC_031176 cabp7b coding downstream 42346 32086448 ~ 32092856 (-)
XLOC_031175 arpc5lb coding downstream 60565 32060881 ~ 32074637 (-)
XLOC_031174 svopb coding downstream 192581 31931834 ~ 31942621 (-)
XLOC_031180 m17 coding upstream 18720 32155141 ~ 32158242 (-)
XLOC_031181 BX004981.3 coding upstream 33749 32170170 ~ 32170286 (-)
XLOC_031182 myhz1.3 coding upstream 126078 32262499 ~ 32274383 (-)
XLOC_031183 myhz1.2 coding upstream 145394 32281815 ~ 32293002 (-)
XLOC_031184 myhz1.1 coding upstream 162203 32298624 ~ 32309129 (-)
XLOC_031166 NA non-coding downstream 442838 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 458395 31674653 ~ 31676807 (-)
XLOC_031162 NA non-coding downstream 860537 31266274 ~ 31274665 (-)
XLOC_031187 NA non-coding upstream 205822 32342243 ~ 32357002 (-)
XLOC_031193 NA non-coding upstream 380250 32516671 ~ 32536749 (-)
XLOC_031194 NA non-coding upstream 424159 32560580 ~ 32737158 (-)
XLOC_031195 NA non-coding upstream 646246 32782667 ~ 32784800 (-)

Expression


Co-expression Network