XLOC_031180 (m17)


Basic Information

Item Value
gene id XLOC_031180
gene name m17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32155141 ~ 32158242 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060556
GTTTGAAACGTTGTCTGTGAACGGAGAATGAACTGTCATGTCAGGAACATGCTCTGCCTGTCTCAGAGATTGCAAGTCAAATTCAGTAACATACTTCGCTATCATAATCTTGATTGCCGTTCAGTTAGTGCAACCAACAATGTCATGCAAGAACGAAAACTGCAGCCAGCGTCTTCACCGAAGTCTGAAGCTCAACAAGTTTACAAACAAGATGACAGTGAAGCTCTTGGACATATATAAAGCCAGTCAAGGAGACTCTACAGACCTGATCTGTGAAATGCAAATGGACAATGTTCCAGTGTCTACAATCTCCGGTCAGACTGAATCGGAGCGCATCTTAAGTATGTATTCCCACCTGAAGGCGTTTCTGCCACACCTGAAGACAGTGATGGAGCAGCAGCGGGACCTGGATCCTCCAACCAACCCCGTGACAGAGGGAATTAACAGCTTGATTACACACGTTCGCCACATGGCTGTAAGGGTGAACTGTCTCTTACAAATCCTGCAGCCAAATATACCCATTCCTGAGCCAGCTGAAAGGCCAACGGGAATTCCCCCAGCGCAGAATATTTTCCAGCAGAAGGTCTATGGATGCATCGTCCTAACTCGGCTTCAGCAGCTCCTTAGTCAAGCAGTTCAAGAACAAAAGTCTCTCAAGGGAAAAACCTGCAGGAGGACAAAAAAGAATTATTCTTGATCAACTCAAACTTGTTCTGTTATGTAAGACCacgtaatttattattaatatttatttttgtactgtTTATAAGAAATGTTTTCTGTAGAAGTGTCCTCTTTTGCTGaggatatatttattcatataatttatttctgtCCTAATTGTCACATTCATGTATGTGGACCAAA
>TCONS_00060557
GAACATGCTCTGCCTGTCTCAGAGATTGCAAGTCAAATTCAgaGCATACTTCGCTATCATAATCTTGATTGCCGTTCAGTTAGTGCAACCAACAATGTCATGCAAGAACGAAAACTGCAGCCAGCGTCTTCACCGAAGTCTGAAGCTCAACAAGTTTACAAACAAGATGACAGTGAAGCTCTTGGACATATATAAAGCCAGTCAAGGAGACTCTACAGACCTGATCTGTGAAATGCAAATGGACAATGTTCCAGTGTCTACAATCTCCGGTCAGACTGAATCGGAGCGCATCTTAAGTATGTATTCCCACCTGAAGGCGTTTCTGCCACACCTGAAGACAGTGATGGAGCAGCAGCGGGACCTGGATCCTCCAACCAACCCCGTGACAGAGGGAATTAACAGCTTGATTACACACGTTCGCCACATGGCTGTAAGGGTGAACTGTCTCTTACAAATCCTGCAGCCAAATATACCCATTCCTGAGCCAGCTGAAAGGCCAACGGGAATTCCCCCAGCGCAGAATATTTTCCAGCAGAAGGTCTATGGATGCATCGTCCTAACTCGGCTTCAGCAGCTCCTTAGTCAAGCAGTTCAAGAACAAAAGTCTCTCAAGGGAAAAACCTGCAGGAGGACAAAAAAGAATTATTCTTGATCAACTCAAACTTGTTCTGTTATGTAAGACCacgtaatttattattaatatttatttttgtactgtTTATAAGAAATGTTTTCT

Function

symbol description
m17 Predicted to enable ciliary neurotrophic factor receptor binding activity. Predicted to act upstream of or within ciliary neurotrophic factor-mediated signaling pathway and negative regulation of neuron apoptotic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cranial ganglion; eye; pleuroperitoneal region; and presumptive neural retina.

GO:

id name namespace
GO:0070120 ciliary neurotrophic factor-mediated signaling pathway biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005127 ciliary neurotrophic factor receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-368 Predicted to enable ciliary neurotrophic factor receptor binding activity. Predicted to act upstream of or within ciliary neurotrophic factor-mediated signaling pathway and negative regulation of neuron apoptotic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cranial ganglion; eye; pleuroperitoneal region; and presumptive neural retina.

Ensembl:

ensembl_id ENSDARG00000035435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060556 False 867 mRNA 0.42 3 32155141 32158242
TCONS_00060557 True 736 mRNA 0.44 3 32155227 32158198

Neighbor

gene id symbol gene type direction distance location
XLOC_031179 NA coding downstream 18720 32135202 ~ 32136421 (-)
XLOC_031178 BX004981.1 coding downstream 22911 32129482 ~ 32132230 (-)
XLOC_031177 NA coding downstream 51815 32101284 ~ 32103326 (-)
XLOC_031176 cabp7b coding downstream 62285 32086448 ~ 32092856 (-)
XLOC_031175 arpc5lb coding downstream 80504 32060881 ~ 32074637 (-)
XLOC_031181 BX004981.3 coding upstream 11928 32170170 ~ 32170286 (-)
XLOC_031182 myhz1.3 coding upstream 104257 32262499 ~ 32274383 (-)
XLOC_031183 myhz1.2 coding upstream 123573 32281815 ~ 32293002 (-)
XLOC_031184 myhz1.1 coding upstream 140382 32298624 ~ 32309129 (-)
XLOC_031185 hspb15 coding upstream 163071 32321313 ~ 32323136 (-)
XLOC_031166 NA non-coding downstream 462777 31691090 ~ 31692364 (-)
XLOC_031165 NA non-coding downstream 478334 31674653 ~ 31676807 (-)
XLOC_031187 NA non-coding upstream 184001 32342243 ~ 32357002 (-)
XLOC_031193 NA non-coding upstream 358429 32516671 ~ 32536749 (-)
XLOC_031194 NA non-coding upstream 402338 32560580 ~ 32737158 (-)
XLOC_031195 NA non-coding upstream 624425 32782667 ~ 32784800 (-)

Expression


Co-expression Network