Gene
RNA
| Item | Value |
|---|---|
| gene id | G1208273 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 4792571 ~ 4792809 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1379895 | True | 239 | lncRNA | 0.65 | 1 | 4792571 | 4792809 |
4,791,600
4,792,000
4,792,400
4,792,800
4,793,200
4,793,600
4,794,000
4,794,400
4,794,800
4,795,200
4,795,600
4,796,000
NC_048578.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| egr1 | LOC106604926 | coding | downstream | 98145 | 4690035 ~ 4694426 (-) |
| LOC100136712 | LOC106604929 | coding | downstream | 224704 | 4531744 ~ 4567867 (-) |
| LOC110487697 | NA | coding | downstream | 280636 | 4511221 ~ 4511935 (-) |
| LOC110489461 | pde6a | coding | downstream | 537857 | 4237602 ~ 4254714 (-) |
| LOC110488577 | LOC106604933 | coding | downstream | 742365 | 3839332 ~ 4050206 (-) |
| reep2 | LOC106604925 | coding | upstream | 34732 | 4827541 ~ 4860434 (-) |
| LOC110488590 | LOC106604924 | coding | upstream | 68345 | 4861154 ~ 4880515 (-) |
| LOC110488591 | LOC106604923 | coding | upstream | 89011 | 4881820 ~ 4892772 (-) |
| LOC110488592 | LOC106604922 | coding | upstream | 106718 | 4899527 ~ 4922510 (-) |
| LOC110488595 | LOC106604921 | coding | upstream | 137671 | 4930480 ~ 4937028 (-) |
| G1208247 | NA | non-coding | downstream | 35181 | 4757174 ~ 4757390 (-) |
| G1208241 | NA | non-coding | downstream | 46195 | 4746170 ~ 4746376 (-) |
| G1208229 | NA | non-coding | downstream | 54712 | 4737637 ~ 4737859 (-) |
| G1208227 | NA | non-coding | downstream | 57850 | 4734469 ~ 4734721 (-) |
| G1208222 | NA | non-coding | downstream | 61645 | 4730622 ~ 4730926 (-) |
| G1208314 | NA | non-coding | upstream | 102690 | 4895499 ~ 4895724 (-) |
| G1208321 | NA | non-coding | upstream | 124125 | 4916934 ~ 4917174 (-) |
| G1208324 | NA | non-coding | upstream | 127681 | 4920490 ~ 4920693 (-) |
| LOC110488599 | LOC106604914 | non-coding | upstream | 189524 | 4982188 ~ 5198387 (-) |
| G1208516 | NA | non-coding | upstream | 524125 | 5316934 ~ 5317603 (-) |
| G1206939 | LOC100136477 | other | downstream | 566602 | 4225039 ~ 4225969 (-) |
| LOC110488575 | LOC106604935 | other | downstream | 1058625 | 3728495 ~ 3733973 (-) |
| G1206357 | LOC106604937 | other | downstream | 1180278 | 3610803 ~ 3612293 (-) |
| G1206291 | fbxo38 | other | downstream | 1324902 | 3467063 ~ 3467669 (-) |
| G1206283 | LOC106604946 | other | downstream | 1341442 | 3449081 ~ 3451129 (-) |
| LOC110489463 | LOC106601388 | other | upstream | 748370 | 5541035 ~ 5542569 (-) |
| G1208831 | NA | other | upstream | 1073513 | 5866322 ~ 5866950 (-) |
| G1209268 | NA | other | upstream | 1346551 | 6139360 ~ 6140037 (-) |
| G1209275 | LOC106604892 | other | upstream | 1353137 | 6145946 ~ 6150661 (-) |
