G1208884


Basic Information

Item Value
gene id G1208884
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 5903921 ~ 5907769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1380535
CTTTTATTCACACTTTACAAAAAAAGCTAAGTCTTTAAATCTACTACAATACTACCAGCAATTCAGGGGTATCAAACTGGACATTTGCTTCTGttcaaaacaaataaaatatatcaaggggggagggggggggagtaaGGACAGAAAAAAAGCTTTTGAACTAGGACTAAATTTATATTTCCCATTTCAACCTTTCCCCTCTGTAAAAATTCATAAAATTCTAACTTTAGCACAGTGGCGAAAGAATCATATTTACTTTAAAAAGGTGACTTTAATTTATTCAATAATAAATGtgggaaaggaggggggggggagcgtGATCATTCCATTTCCTGTTTAAAATGTGACAGTTGCAATATATAGTCAGTCACAGACATATTTCAGTCCCGATGGtaacaaaacagagagagagagagcgtctgTCTGGGCCACCTGACAGATGGGGAGACGGGTCAGTTCCTCACAGATGGTACGGCAGAGGAGATGGAACGGCACAGGGGCTTCAGTAGCGGGGTTAAAAGGACTAAAGTAATACACTTGACTGTTAAGTGTCTAGGGGGTTGGACATAGGGCTAGGTATAGGGGAACATGCTTTTCTAGATCCAGAATTCAGCGGTGGAGGGGCAAGACAGGCTAGGTGACTATGGTGACAAGGGACTATCAAGGGGTTCTAAGAGCTGAGCTAAAGTACACGGAGGGTGCAAAACATTCTGGAAGTAAGGGGGTTCCAGAAGAGGTCTTCACGTTGCCCCGGTGAAAAAAAAACTAAAGCTTGACAAATATTCCATACCGGATTACTAGATCGCTCCACAAGGAGTATATACACATAACATTGTCACAGCTCatacaaaaaaaagaaagaaaatacaaAACGAGAACAAAAACCCCAAAGGACATCAAATGTCTGgacagtatttaaaaaataaaatgggaGAAGAGGTTGTTCCGGAGTTGGCCGATTAGAAGTAGTGCAAGACAACAAAACGGCTACGGTGAGGCACAACGTTCCGGTTGTACAACGCCAATTGTGGGATACTGGATGTGCGTGATGCAAAAAAAAATCACTCTTAGGGTCAATCTGAAATGAcaacctatttcctatatagTGAATAGGGTGTTATTGGAGACCTAACCTTACTTTTGTCTGAACTGTGAGTGGATGAATGGGTCGGTTGGTGGCAGGCAGCAGTATGGACCAATGGCTTGTTAATAGAATGGATTTGAAGATGTATCATCATTTAGTCAGTAGATCTATTTACAATCTGAGAAACATGTTCTCAAATCATAACAGGAAAACAAGCAATACAGACGCATAGAAACAGTTAACCTAGGGCAGGAGTGCAAAGTAGTGGCAGCGAACGCCTGGAACAACCCCTTACGTCTTTTGTACAAGCTGGTCATTTCAATTTCATCTTAACATTtactggataaaaaaaaaattgccatagtttacaatacaatcctgtcttttttttcttcttcaaattGGATCATAATTTACTCATAGTACAAAAAAAACCCTGCCAGAAAACAGGTCTTTTGTGACTCATATACAATCGTGTAAAGACAATCTAGATTTATATTCTGTACAAACACTTGTGAAAAAAACCCACTGCTGTAGAGTACGGAATTTATGGCTGAGGGAAAAAAAATCACTACTGGCCTCAAGAGACAGTGCTACAAGATCTCTGCGTATGTCCACGTGTGTGACAGTGAGAGGATTGCTGGTTTAAACTCCTGTACATCAGCTATTGCCCTCCCTCTTTAAAAAGTAACAAATCTGAAAAATGTTTAGTTGAGAATTTCCTACGTTGCATTGCCCCTCAGCCAAAATCCCCTACCCCATTACAAAAGGTGGtatatggtccaaatcaggaatgggcaactccagtcctcggggggcCTGATTGCAGTCACAATTTTGCCCCAGCTAACGCACCCAACTCCTATAAATCAACTAGTCGTGATAGTTTAAAACCCAATTCGTTTAAAATCAGCTGTGTTGGCTAGAGCTGGTGAAAAAGTGAGACACCACTCCAGCACCCAAGGACTGGAGTTGCACATCCCTGGTCCAAATGAAGTCATATTAACAATGACTCTGTCACGTACACATGCAGAGGAAAAACAGTGTGCAAAAAGGGATGGTAGCTGGCCACTAATTACATGTTATTCAACTACTTAAAATCATTCAAATCTGTTCCAATCCAGAGGAAACAGATACATTTTTTTAGCACTATGCCTGACCGGCATGCCAACAACAGGTCCAGACAAGTGTATTTGGTGGTTGCGGTCATCCTTTCCTAAAAGGATAATAATCATCAACATCTAAAAACACCGTGAGGCAATTCCACAGGAACAGAGAcccagatttttcactttaaaaacgTATGTCAAACAAACccactctatgcacaaggactactttcaaCAATTCCCACAGAAGACTGAACAAAAACATTTACTTGATGAACAGTGCAGATGAAAAGTTGGTAACAGAACGATGGCTCaaactgtcattctgttaccaaacgttGCACCTGCACTGATCcaattaaatgtgtttttgtcaaattcagtggaaattgttaaaaagtagtccttgtgcatagagttgtatgtttgtttaactttgcaatcattggtttttgtttgacatacattttaaagttacaaatcggagtcagtgtcacggttaccatggaattgcctcTCAGCAGTGACATCAGTCTACATGCACCAGTGGGGTTAGTTCCTATTGCACCACTTGGAGAGGGAGACAACTGACTAGGTTCTATTACTCAATAGTAGTGGACTGGTGAGCACCACAAAGCACCCGGTGAGCACCACAATTTTGGACCCACAGAGAGATTGGCCCTATAGCACAGAAAGGAGGAGTGGCACACCATGTTATGCCTTATATGGTAGATAGATATACCATCACATTGATCTCAGTGGGGAGAGAAAAGACAAGGCCCACTCTTAGCCTTGGCTGAGACATTAGACATGTCTGTTTCTGCCATTTGTGCTGGTTTGAGATTGGTATAGGACAGACTATCAGCTGCAAGCTTTAGAAGTGGTGTCCTTTCTCTCCTTGCCTTGTAAAGGGTGTCCACAGATAGAGTGATACAAGGTATTTCTTGTGCCATTGTTCAAGACTGCACAGGTCATGTCAAAGACAACAAGAGTCAGGTGATATTGCTAAAGATCTAAATATCTATACGGGGGCCAGAGGGGATATGGTGATATAATCGAATGAATGACCGGGTGGGGGATCcaaaacataacagacaggattgACATTTTCTAAATGAAAACAAAATGGAAAACGACAATgaggaaaataaaaaatatataacagaAATCCCTGTTGGCCAGACCTCACTGTACGGCTGATTCTTATGTTACAGGTTGGTTGTGTATTCCGTCTCATCTTCTTTCCTCCAAGTGACAACGAGAGAAGAGCTGGAGGGCTAGAGGCTGCACACTGCTATAGCATACAGCGCCCCTGGAGTGGGGTTGTCTCACCACTACCTGCGTCCTCCAGGCAGGTGGATGCCGTTGACCTGGTTGTTGGCCTGGCCCTGGGGCAGAGTGCTGGGCAGCAGCAGCTCCAGCTGGGCGAACAGGGAGAAGTGGTCAGAGGGGATGTGGGGGTGCGGGCAGCCGCTGATATTGTTCTCATGGAGCCAGTTGGAGTCCAGGGGACCCAGGATGCCGAGCACATTGATCTGAGGCTTAGAGTAGAAGATGTAGTCAATCACA

Function

NR:

description
CCR4-NOT transcription complex subunit 6-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1380535 True 3762 TUCP 0.43 3 5903921 5907769

Neighbor

gene id symbol gene type direction distance location
LOC110488605 LOC106604911 coding upstream 501130 5398410 ~ 5402791 (+)
LOC110488602 NA coding upstream 671267 5228027 ~ 5232654 (+)
LOC110488601 NA coding upstream 683881 5216371 ~ 5220040 (+)
phykpl LOC100286425 coding upstream 952570 4937303 ~ 4965435 (+)
LOC110488588 NA coding upstream 1164676 4730739 ~ 4739245 (+)
LOC110488611 LOC106604836 coding downstream 92331 6000100 ~ 6003751 (+)
LOC110488614 LOC106604892 coding downstream 238040 6145809 ~ 6150743 (+)
LOC110488618 LOC106604841 coding downstream 259462 6167231 ~ 6175289 (+)
LOC110488619 LOC106604842 coding downstream 290255 6198024 ~ 6291026 (+)
LOC100136156 LOC100136156 coding downstream 386432 6294201 ~ 6298860 (+)
G1208885 NA non-coding upstream 1926 5901748 ~ 5901995 (+)
G1208881 NA non-coding upstream 4527 5899187 ~ 5899394 (+)
G1208868 NA non-coding upstream 11721 5891976 ~ 5892200 (+)
G1208844 NA non-coding upstream 27188 5876379 ~ 5876733 (+)
G1208841 NA non-coding upstream 28788 5874827 ~ 5875133 (+)
G1208907 NA non-coding downstream 35871 5943640 ~ 5943948 (+)
G1208925 NA non-coding downstream 65150 5972919 ~ 5973128 (+)
G1208928 NA non-coding downstream 70033 5977802 ~ 5978028 (+)
G1208938 NA non-coding downstream 87091 5994860 ~ 5995145 (+)
G1208895 NA non-coding downstream 97143 6004912 ~ 6005720 (+)
G1207553 NA other upstream 981361 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 1509881 4327546 ~ 4477610 (+)
G1205631 LOC106611372 other upstream 2728691 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 2751188 2837214 ~ 3160873 (+)
G1202826 NA other upstream 4962747 940502 ~ 941174 (+)
G1209615 LOC106604863 other downstream 836165 6743934 ~ 6744790 (+)
G1209622 NA other downstream 843583 6751352 ~ 6751714 (+)
G1209572 NA other downstream 845188 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 1411251 7251365 ~ 7385487 (+)
G1210502 NA other downstream 1524608 7432377 ~ 7435168 (+)

Expression


Co-expression Network