G1209133


Basic Information

Item Value
gene id G1209133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6152255 ~ 6152959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1380804
gaaccagacttgtggaggtctacaatattttttctgaggtcttggctgatttcttttgattccccatgatgtcaagcagaggcactaagtttgaatgtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaattagcctatcagaaacttctaaagccatgacataattttctgggattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgcgatacagtgaattacaagtgaaataatctgtctgtaaacaattgtttggaaaaattacttgtgtcatgcagaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaagttgtgaagtggttgaaaaacaagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtatttccacactatgaggttggagtaATACTGTGATATTGATCAAATTATCATAATGCCATTTTAATGTAACAGCTGCATGAAAATACCAcctggaatttcagcctgtttcgTTGGGATGTAGTTTTGGCCTTCCTGGTGACATCGCCAGGCAGTAAATTAGTTCATAGAGAAacaagaaagagagttccaaacctctctgccaataacagttaGTTTTCAATTTCCCCCTcaccactcagaccactccca

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1380804 True 705 lncRNA 0.38 1 6152255 6152959

Neighbor

gene id symbol gene type direction distance location
LOC110488614 LOC106604892 coding upstream 1512 6145809 ~ 6150743 (+)
LOC110488611 LOC106604836 coding upstream 148504 6000100 ~ 6003751 (+)
LOC110488605 LOC106604911 coding upstream 749464 5398410 ~ 5402791 (+)
LOC110488602 NA coding upstream 919601 5228027 ~ 5232654 (+)
LOC110488601 NA coding upstream 932215 5216371 ~ 5220040 (+)
LOC110488618 LOC106604841 coding downstream 14272 6167231 ~ 6175289 (+)
LOC110488619 LOC106604842 coding downstream 45065 6198024 ~ 6291026 (+)
LOC100136156 LOC100136156 coding downstream 141242 6294201 ~ 6298860 (+)
LOC110488624 LOC106604895 coding downstream 261172 6414131 ~ 6419690 (+)
LOC110488626 LOC106604896 coding downstream 279062 6432021 ~ 6440952 (+)
G1209130 NA non-coding upstream 5488 6146374 ~ 6146767 (+)
G1209127 NA non-coding upstream 7948 6144074 ~ 6144307 (+)
G1209125 NA non-coding upstream 10776 6140691 ~ 6141479 (+)
G1209089 NA non-coding upstream 71397 6080557 ~ 6080858 (+)
G1209085 NA non-coding upstream 76471 6075548 ~ 6075784 (+)
G1209137 NA non-coding downstream 10364 6163323 ~ 6164399 (+)
G1209219 LOC106604845 non-coding downstream 154530 6307489 ~ 6307824 (+)
G1209367 NA non-coding downstream 162058 6315017 ~ 6315255 (+)
G1209373 NA non-coding downstream 169619 6322578 ~ 6324818 (+)
G1209375 LOC106604846 non-coding downstream 183854 6336813 ~ 6337467 (+)
G1208884 NA other upstream 244486 5903921 ~ 5907769 (+)
G1207553 NA other upstream 1229695 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 1758215 4327546 ~ 4477610 (+)
G1205631 LOC106611372 other upstream 2977025 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 2999522 2837214 ~ 3160873 (+)
G1209615 LOC106604863 other downstream 590975 6743934 ~ 6744790 (+)
G1209622 NA other downstream 598393 6751352 ~ 6751714 (+)
G1209572 NA other downstream 599998 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 1166061 7251365 ~ 7385487 (+)
G1210502 NA other downstream 1279418 7432377 ~ 7435168 (+)

Expression


Co-expression Network