XLOC_031189 (fbxw2)


Basic Information

Item Value
gene id XLOC_031189
gene name fbxw2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32380026 ~ 32396929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060572
GCTGTAATTCCTCATTGCTAACGGAGGCTCCCTTTTAGCCTAGCCAGCTAactccagagaaaaaaaaatacagaaaaaacagCAATGAACTTGCTTTAAATTCACGTAtgatattaaattgttaaataatacAGTCGTAAACCGTGAACGATTATAGATCGATTACATTTTCTGAGTCAAAGCGTTTCCGTTAGATTCATACTGTACATAATAATGCTAGAGTGGGACTCTAGATGTTTAATTAATGGCAGCTGACGGGGAGATTTGCTCATTTTTGTTCATGATTAATGTTTTAATTGTCACCCGACTAATTCAGATTATGACTCGACTGTGAAAACGAAAGTTTCTCCTTTGTAGAGCGATATCGATTTGAGTTGACACCTGTTAGCTAGCGCGGCTAGCTAGCGCTCTCCTCGTACTGATTCTACTGGAAATGGTAGACGCCCTCATGTGCCCATGGAGAAGGTGGCTTTTGAGGGGTGGCTGGAGTCAGTTTCCACCTCCTTCCTGGTGCTAAGTGACCAGCAGCGCAACCAAACCCTGGACCACCTCATCTCACTGAGCGGTGCCGCCCAGCTGCGACACCTGTCCAATGGCCTGGAAGCACTGCTCAAGCGGGATTTTCTGCGCCTGCTGCCGTTAGAGTTGGCCTTCTACCTGCTGCGCTGGCTGGACCCCCAGACCCTGCTCACCTGCTGTCTAGTGTGCAAGCAGTGGAATAAGGTGATCAATGGCTGTACTGAAGTGTGGCAGAGTGTGTGTCGAGACCTTGGCTGGCGCATCGATGAGTCCATTCAGGACGCTAGACACTGGAAGGTAATATATCTGAAGGCCAAACTGCGCATGaagcagctgagggaggaggatGCGTTTGAAACCAGCTCTCTCATTGGACACAGTGCTCGAGTATATGCTCTTTACTACCGGGATGGGCTCCTCTGCACAGGTTCTGATGACCTGTCAGCCAAACTATGGGATGTCCGCACAGGCCAGTGTGTCTATGGCATCCAGACCCACACCTGTGCCACTGTCAAATTTGATGAGCAGAAACTGGTGACTGGGTCTTTTGATAACACCATTGCATGTTGGGAATGGAGCACTGGTGCCAAAATCCAGCAGTTTCGAGGACATACTGGGGCAGTGTTCAGCATAGACTACAATGATGAGTTGGACACCCTGGTCAGCGGCTCTGCAGACTTCACTGTCAAAGTATGGTCCCTTTCTGCAGGAACGTGTGTCAACACTCTTACTGGACACACAGAGTGGGTCACTAAGGTGCACCTTCAGAAAAGCCAAGTGGAGTCCATGATGCACAGTCCTGGTGACTACATACTACTGAGTGttgataaatatgaaataaagGTGTGGCCTATAGGCCGTGAGATTAACTGCAAGTGCTTAAAAACTCTATCCGTGTCAGAAGACCGCAGTGTTTGCTTGCAGCCACGATTACAGTTTGATGGCCGGTACATTGTGTGTTGTTCGGACCTTGGCATATACCAGTGGGACTTCGCAAGCTTTGATGTCATCAGAGTCATCAAGCCACAGCAGGACCCCTCCAGCCTCTCTCTGCTTAGTTTTGGTGAGGTTTTCGCTCTTCTCTTTGACAACCACCATCTCTATGTTCTGGACTTGAGGACTGAGGTTACTGTGGGCCGCTGGCCACTGCCAGCCTACCGTAAATCGAAACGTGGCTCTAGTTTCTTAGCAGGCGTCACTTCCTGGCTCAATGGACTGGATGGCAAGAATGATGCAGGCCTAGTGTTTGCCACCAGTATGCCTGACCATAGCATTCATCTGGTTCTCTGGAGAGAGAATGGCTAGGACATGGAGGAGGCAAATACTAGCCCTGTGCTTTGAAAGCAGGCAGAACTTTAcagcaaaaagaagaaaaaagggtGCTTTTCATTAAACTAAACAGCCAACATTGTTAGATAATGCATGGACCAAAGTGTTTCCCCCTCCTCAACTTTGTTTCCATTCGCATTATGGATTCACTCTTGCTTCACTTTCTTTCCTAGTTACTTGCAAACCATGCATTCAACACTCATAGAAAAGGAGACCACTGGAGATTGGCAGTAGCTTTTCTCCATCATGTGAATCCAATTCAAGGGTTTTGTTTGTTAAAGACTTGAGAGATTTCTCGCTGAACTTGAGTTGAGTCGCTTTTGCTTTCACACCAGTGAAAGTTGTTAAAATGCTACTGCACCACCAGAGCGCAGATCGCTCCACAGCAGGCACGAGCAGGGGAGGTGGCATGTTTTATAGCACAATCACCAGGATTGACAATGAAGTacgttgtttgttttttaaatgtttaaagtgttaccttttcaGCAACTTTAGTTCTTTTGGACAAAGAGAAATGTTGCCTTAAATCTATGATTTCCTTTCGAAGAAACTGAATTTGCAGACCTGTGTGGCTATAGGCGCTGGATTGCAGCCCAAACATCTGTGTTGGTCATTTTGCTGGGTCTTAAAAAGGCTCTGATGAAATGCTGTCTGAATGAGTCAAATGGGCTTTTGTATGTAGGTCCTCGCCGTTACTGACCCTTggtttttaattttcattcagtTTATTAGTCATGTGCCTTTGTTTTAACACTTAACCGTTTGCATATACAGCGTGTCACATTTTGAAGTTCAGTCCTCCCTCAATGAGAAAAGTCtgttttatgcttatttttttaaCCTAATGTAATCAACACTGTAAGAGTTAGTCTTACCACTATTTAGCCAGACTAGATCACACAAAAGTGTTTCTTGTGAAAGTCGTTGaatgttcatttttaatctttatttttaaagactGATCTTATTTTTGCATAATCCAGGGCTAGCCAGCCTTTTGTCACTTTATATAGCTGCTTCTGTAGTTCTGTATATCCCACTGGAAGATTAGAacaatttaactttaattttccTTCCCCAAACCATCAAAACAGATAGTTTAATGCATTTTCACTGTATTGCTCACTTACTTCAGAGTTTAGATGCTGGGTAAAAGTATGATTACCATTGGGGGGTTACGACGTCTGTATGCACTGGTTGTGTTACTTCACTGAAATGCAAACCTCACAGACAGTAATGCCATCCGTCCATCGCTAGCAGAATTCAGGTCTGTTGTTTGTATAACAAAACATGCTGTCTCACAAATAAACGACAGTAGCTAACTATAAAA
>TCONS_00060573
TGTCAAAGTATGGTCCCTTTCTGCAGGAACGTGTGTCAACACTCTTACTGGACACACAGAGTGGGTCACTAAGGTGCACCTTCAGAAAAGCCAAGTGGAGTCCATGATGCACAGTCCTGGTGACTACATACTACTGAGTGttgataaatatgaaataaagGTGTGGCCTATAGGCCGTGAGATTAACTGCAAGTGCTTAAAAACTCTATCCGTGTCAGAAGACCGCAGTGTTTGCTTGCAGCCACGATTACAGTTTGATGGCCGGTACATTGTGTGTTGTTCGGACCTTGGCATATACCAGTGGGACTTCGCAAGCTTTGATGTCATCAGGTTCATGCATTTCATCTGTCCGTTTACATTATCTTCATTTTATATTAGAGACATaacttttaatatacattttaacatttatgtctgtaagtaaataattaacatgatgtaaaattaaatgtaaaaggatttgtgcaattttttttttactaatttcactaattaaataagctaaattgttttaTTGAATTGATCTTCTCAGAGTCATCAAGCCACAGCAGGACCCCTCCAGCCTCTCTCTGCTTAGTTTTGGTGAGGTTTTCGCTCTTCTCTTTGACAACCACCATCTCTATGTTCTGGACTTGAGGACTGAGGTTACTGTGGGCCGCTGGCCACTGCCAGCCTACCGTAAATCGAAACGTGGCTCTAGTTTCTTAGCAGGCGTCACTTCCTGGCTCAATGGACTGGATGGCAAGAATGATGCAGGCCTAGTGTTTGCCA
>TCONS_00060574
ACGGAGGCTCCCTTTTAGCCTAGCCAGCTAactccagagaaaaaaaaatacagaaaaaacagCAATGAACTTGCTTTAAATTCACGTAtgatattaaattgttaaataatacAGTCGTAAACCGTGAACGATTATAGATCGATTACATTTTCTGAGTCAAAGCGTTTCCGTTAGATTCATACTGTACATAATAATGCTAGAGTGGGACTCTAGATGTTTAATTAATGGCAGCTGACGGGGAGATTTGCTCATTTTTGTTCATGATTAATGTTTTAATTGTCACCCGACTAATTCAGATTATGACTCGACTGTGAAAACGAAAGTTTCTCCTTTGTAGAGCGATATCGATTTGAGTTGACACCTGTTAGCTAGCGCGGCTAGCTAGCGCTCTCCTCGTACTGATTCTACTGGAAATGAGATCACAAGTGCTCAGCATCACATTATCATCATCACAGCATAAACTGCACCtcaaaaagaagacaaaaa

Function

symbol description
fbxw2 Orthologous to human FBXW2 (F-box and WD repeat domain containing 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050522-303 Orthologous to human FBXW2 (F-box and WD repeat domain containing 2).

Ensembl:

ensembl_id ENSDARG00000009745

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060572 False 3181 mRNA 0.44 7 32380026 32396929
TCONS_00060573 False 771 mRNA 0.42 3 32381436 32383475
TCONS_00060574 True 486 processed_transcript 0.38 2 32395893 32396909

Neighbor

gene id symbol gene type direction distance location
XLOC_031188 gas1b coding downstream 16654 32360336 ~ 32363372 (-)
XLOC_031187 NA coding downstream 23024 32342243 ~ 32357002 (-)
XLOC_031186 dab2 coding downstream 41154 32323775 ~ 32338872 (-)
XLOC_031185 hspb15 coding downstream 56890 32321313 ~ 32323136 (-)
XLOC_031184 myhz1.1 coding downstream 70897 32298624 ~ 32309129 (-)
XLOC_031190 ncs1a coding upstream 5097 32402026 ~ 32445835 (-)
XLOC_031191 gpr107 coding upstream 63524 32460453 ~ 32489796 (-)
XLOC_031192 ntmt1 coding upstream 102141 32499070 ~ 32505280 (-)
XLOC_031193 NA coding upstream 119742 32516671 ~ 32536749 (-)
XLOC_031194 NA coding upstream 163651 32560580 ~ 32737158 (-)
XLOC_031181 BX004981.3 non-coding downstream 209740 32170170 ~ 32170286 (-)
XLOC_031179 NA non-coding downstream 243605 32135202 ~ 32136421 (-)
XLOC_031178 BX004981.1 non-coding downstream 247796 32129482 ~ 32132230 (-)
XLOC_031177 NA non-coding downstream 276700 32101284 ~ 32103326 (-)
XLOC_031195 NA non-coding upstream 385738 32782667 ~ 32784800 (-)
XLOC_031198 NA non-coding upstream 488250 32885179 ~ 32885874 (-)
XLOC_031200 NA non-coding upstream 525727 32922656 ~ 32927919 (-)

Expression


Co-expression Network