G1209373


Basic Information

Item Value
gene id G1209373
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6322578 ~ 6324818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1381079
GTATTTATTTATGTTGAATCAAGTTTCTGTGGTTTTGTTTGGGGTGATTCTTACTTCCTATTTAGGTGGTCTGGTATTGCTCAACCTGTCATGACAACATGGAATGAACCTTCAGAAAAACGCAGAGAAGACATTATTGTATCCAAAATGGGGACAGTTTAAAACTCACAGGAATGTAGCATTTAGTTCCCTGTTGTGGTCCTATTTGTTCTTTCTTAGGACGTACAATAGAGTATCTAGGCTGAAATATTTTGTTTTTGAAGGCGAGGGTAAATGGAAAATGACATATTTCCAAGGAAAGCCAAGTTGCAGAGTTTTCGACACATTGTCTGTGAATGTAATTACTGTCCTTGCAGAAACCATACTGTGATTTGGTTAGCATAAACTAAAAGGATGACCCACAAATGATTTGTCCTTTGCTTTCAAGCAGTAAAGTaaaaataacatttacattaCACTGAGTATCCCAAACcgtaggaacaccttcctaccattgagttgcacccccacaaggtgtcgaaagcgtttcacagggatgctggcccatgttaactccaaatgcttcctacagttgtgtcaagttggctggatgtcctttgggtgatggaccgttcttgatacacacaggaaactgttgagcatgaaactCAGCAgcattgcaattcttgacacaaaccggtgcacctggcacctactaacataccccgttcaaaggcaattacatttttgtcttgcacattcaccctctgaatggtgcataatccatgtttcaattgtctcaatgcttaaaaatccttctttaaccttccTCCCCATTCATCTATACTgatctgaagtggatttaacaagtgacatcaataagggatcatagctttgacctggtcagtctgtcatggaaagagcaagtgttcttaATTTTTGGTATACTCAATGTATATCATACATACAGTTAAAGGgacatttaaaaatgtttcacttcatattcatcatctccagcaccaccacaacatcaacatatgtgaaaattgtGCATTTCTATAttttgtagtaaaaaagataGTGGAAGATAAGGCTGGACTTACATGAAAGCAACTTTCACAACATTTTCACTACAGTTGCAGGTTGCAAGTGACATCATCTCAAGCAACTTTGCTGTTACATGCAGCTACTCAAACGTGATTAAAATTGCATGCAACAGCCAATTAATTGAAGCTGCTTGTTTGAGAATCTCCCCATGTCTTCTGCTGTGTTACATTGTGGTTTCACAAATGAGTTGTTTATCCAACCATTTGGTTATTGTAACAGCAAAGATATAGAAGATATGCATTATGTACAatttagcttgttagctagccaaAATGACATTGCTAACACcaacacagctagctagctagcgcagATCATGGTGGACATTTTTCAGGTCAAAATATCATTTATTGACTGCTAAACCATGTACAATCATTTGTATATGATCTCTTGTTGTGCTAGTCTCTGTTCTGTCAACCTTGACCACTGATGGTGCTGCACATCACTGACAGctgtgttgacatgacaactgGGTCAGAATTCCTAACCTTCGAATGAATAATGTGACAAAAGCAGCCAATTGTTTTGATTGGCTGCTGAAATAATAATGAGTTGCTTATTATTTCACGAAGCAATGAAGAAGCAACTCAAATTGCGTGAAAGTTTCATCGTGTAACGGCAGCctgtgtttccaatgacatcatcaagcAATTAGAAGACAATGCCTACTCATAAATGCTTAAAATCACATTATGcacatgtaacagtatagcttccgtccctctcctcgccccaacctgggctcgaaccagggaccctctgcacacatcaaccatGAAGCATCgtgccacaaaagccacggcccttgcagagcaaggggaacaactacttctaggtctcagagcgagtaacGTCACAgactgaaacactattagcgcgcaccaccgctaactagctagccatttcacatcggccacaatcaccccccttttgacctcgtCCTTTttcgcagcaaccagtgatccggatcaacagcatcaatgtaacagtatagcttccgtccctctcctcgccccagcctgggctcaaaccagggaccctctgcacacatcaaccacagtcattcacgaagcatcgttacccatcgcgccaaggggaacaactacttctaggtctcagagcaagtgacgtcaccgactgaaacactattagcgc

Function

NR:

description
PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1381079 True 2241 lncRNA 0.41 1 6322578 6324818

Neighbor

gene id symbol gene type direction distance location
LOC100136156 LOC100136156 coding upstream 23718 6294201 ~ 6298860 (+)
LOC110488619 LOC106604842 coding upstream 31552 6198024 ~ 6291026 (+)
LOC110488618 LOC106604841 coding upstream 147289 6167231 ~ 6175289 (+)
LOC110488614 LOC106604892 coding upstream 171835 6145809 ~ 6150743 (+)
LOC110488611 LOC106604836 coding upstream 318827 6000100 ~ 6003751 (+)
LOC110488624 LOC106604895 coding downstream 89313 6414131 ~ 6419690 (+)
LOC110488626 LOC106604896 coding downstream 107203 6432021 ~ 6440952 (+)
LOC110488627 LOC106604897 coding downstream 138993 6463811 ~ 6468368 (+)
LOC110488631 LOC106604850 coding downstream 225587 6550405 ~ 6557892 (+)
tmco6 tmco6 coding downstream 250237 6575055 ~ 6584480 (+)
G1209367 NA non-coding upstream 7323 6315017 ~ 6315255 (+)
G1209219 LOC106604845 non-coding upstream 14754 6307489 ~ 6307824 (+)
G1209137 NA non-coding upstream 158179 6163323 ~ 6164399 (+)
G1209133 NA non-coding upstream 169619 6152255 ~ 6152959 (+)
G1209130 NA non-coding upstream 175811 6146374 ~ 6146767 (+)
G1209375 LOC106604846 non-coding downstream 11995 6336813 ~ 6337467 (+)
G1209475 NA non-coding downstream 158273 6483091 ~ 6486616 (+)
G1209491 NA non-coding downstream 179058 6503876 ~ 6510769 (+)
G1209492 NA non-coding downstream 181227 6506045 ~ 6512141 (+)
G1209544 NA non-coding downstream 291728 6616546 ~ 6616789 (+)
G1208884 NA other upstream 414809 5903921 ~ 5907769 (+)
G1207553 NA other upstream 1400018 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 1928538 4327546 ~ 4477610 (+)
G1205631 LOC106611372 other upstream 3147348 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 3169845 2837214 ~ 3160873 (+)
G1209615 LOC106604863 other downstream 419116 6743934 ~ 6744790 (+)
G1209622 NA other downstream 426534 6751352 ~ 6751714 (+)
G1209572 NA other downstream 428139 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 994202 7251365 ~ 7385487 (+)
G1210502 NA other downstream 1107559 7432377 ~ 7435168 (+)

Expression


Co-expression Network