G1209807 (tmco6)


Basic Information

Item Value
gene id G1209807
gene name tmco6
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6580092 ~ 6581399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1381569
TGTTGAGGACCCAGACGCTCTCTCTGGCCAGGGCTGGGTGGGTCTGGAGGAAGGCCTGAGGAAAAGCACACAGCGCAGCCAGGAGACGGCTATCGTTTAGCTGGGGCTGCAGGGCCCCCAGGGGCCCAGATAACAGCAGGTTCCCAACACAGCGCAGCAGGGGCCAGAtcaaCAGCTCAATTCCCTCCTCTATACTTCCTTTAGCAACAGCAACACCAAGTGTCACCAAGAGAGAAGTGCAATGTAGAAGAGTACCTTGGGCCACCAGTGCCCCATTGTCCACGTTGCTGCAGGCCAGGTAGTGCAGGCACCAGGCACACTCAATGACTGGTCCCAGGCCAAACTGAGAGTCAGGGGTCAACACTGAGAGGAGGCGAGGGATCAAACCAGACGCCAAGACTGCcGGGATGATTCTCTCTGTGACGTAGTTCGCTGAGATGAGCTGGGAGAGGGTGAACCCTACTGCTTCAACCACTGCCAGGTTAGTCCTGTGgatCTGGATGCAGTTGTTCAAAGCAGGTATGATGCCCTGAGCTAGAAGCATATCTCTCACATTCTCGCTGTCTGGACACATGTTACCCAGGGTGTAGAGACAC

Function

symbol description
tmco6 Orthologous to human TMCO6 (transmembrane and coiled-coil domains 6).

NR:

description
transmembrane and coiled-coil domain-containing protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1381569 True 596 lncRNA 0.56 5 6580092 6581399

Neighbor

gene id symbol gene type direction distance location
LOC110488630 LOC106604849 coding downstream 48840 6526826 ~ 6531252 (-)
si:zfos-741a10.3 LOC106593898 coding downstream 92081 6485046 ~ 6488011 (-)
LOC110488623 LOC106604848 coding downstream 176906 6343720 ~ 6403186 (-)
LOC100136949 m-csfr coding downstream 236845 6324987 ~ 6343247 (-)
LOC110488621 LOC106611873 coding downstream 267692 6310122 ~ 6312400 (-)
LOC110488635 LOC106604855 coding upstream 51788 6633187 ~ 6640573 (-)
wfs1b LOC106604863 coding upstream 158950 6740349 ~ 6752711 (-)
LOC110488653 NA coding upstream 292194 6873593 ~ 6876124 (-)
LOC110488649 LOC106604867 coding upstream 304299 6885698 ~ 6890696 (-)
LOC110488654 LOC106604871 coding upstream 324688 6906087 ~ 6927229 (-)
G1209809 NA non-coding downstream 4180 6575203 ~ 6575912 (-)
G1209762 NA non-coding downstream 66677 6507736 ~ 6513415 (-)
G1209682 NA non-coding downstream 144308 6385143 ~ 6435784 (-)
G1209700 NA non-coding downstream 156999 6408326 ~ 6423093 (-)
G1209653 NA non-coding downstream 256665 6322820 ~ 6323427 (-)
G1209836 NA non-coding upstream 43638 6625037 ~ 6625448 (-)
G1209837 LOC100136012 non-coding upstream 45145 6626544 ~ 6626763 (-)
G1209869 NA non-coding upstream 101733 6683132 ~ 6683421 (-)
G1209883 NA non-coding upstream 125907 6707306 ~ 6707518 (-)
G1209901 NA non-coding upstream 178165 6759564 ~ 6760077 (-)
G1209763 NA other downstream 64156 6514211 ~ 6515936 (-)
G1209275 LOC106604892 other downstream 429431 6145946 ~ 6150661 (-)
G1209268 NA other downstream 440055 6139360 ~ 6140037 (-)
G1208831 NA other downstream 713142 5866322 ~ 5866950 (-)
LOC110489463 LOC106601388 other downstream 1037621 5541035 ~ 5542569 (-)
G1211559 LOC106611856 other upstream 782898 7364297 ~ 7365733 (-)
LOC110488691 NA other upstream 1286601 7664270 ~ 7877610 (-)
si:ch73-233f7.1 LOC106604791 other upstream 1349896 7924328 ~ 7932142 (-)
G1212070 NA other upstream 1949330 8530729 ~ 8533635 (-)
LOC110488715 grhpr other upstream 1995088 8570491 ~ 8578404 (-)

Expression

G1209807(tmco6) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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G1209807(tmco6) Expression in each Bioproject

Bar chart with 7 bars.
G1209807(tmco6) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network